Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative starvation-induced DNA protecting protein/Ferritin and Dps

Gene

MSMEG_3242

Organism
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi41 – 411Iron 1; via tele nitrogenCombined sources
Metal bindingi41 – 411Iron 2; via tele nitrogenCombined sources
Metal bindingi48 – 481MagnesiumCombined sources
Metal bindingi51 – 511MagnesiumCombined sources
Metal bindingi57 – 571Iron 1Combined sources
Metal bindingi57 – 571Iron 2Combined sources
Metal bindingi68 – 681Iron 1Combined sources
Metal bindingi68 – 681Iron 2Combined sources
Metal bindingi72 – 721Iron 1Combined sources
Metal bindingi72 – 721Iron 2Combined sources
Metal bindingi138 – 1381MagnesiumCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-bindingImported, IronCombined sources, MagnesiumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciMSME246196:GJ4Y-3242-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative starvation-induced DNA protecting protein/Ferritin and DpsImported
Submitted name:
Starvation-inducible DNA-binding protein or fine tangled pili major subunitImported
Gene namesi
Ordered Locus Names:MSMEG_3242Imported, MSMEI_3159Imported
OrganismiMycobacterium smegmatis (strain ATCC 700084 / mc(2)155)Imported
Taxonomic identifieri246196 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
Proteomesi
  • UP000006158 Componenti: Chromosome
  • UP000000757 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi246196.MSMEG_3242.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2Z90X-ray2.40A/B/C/D1-161[»]
4M32X-ray1.86A/B/C/D1-161[»]
4M33X-ray2.22A/B/C/D1-161[»]
4M34X-ray2.05A/B/C/D1-161[»]
4M35X-ray2.05A/B/C/D1-161[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini22 – 156135FerritinInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the Dps family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4107Y5Q. Bacteria.
COG0783. LUCA.
HOGENOMiHOG000273542.
KOiK04047.
OMAiLEQLAWM.
OrthoDBiEOG6Z9B6G.

Family and domain databases

Gene3Di1.20.1260.10. 1 hit.
InterProiIPR002177. DPS_DNA-bd.
IPR023188. DPS_DNA-bd_CS.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
IPR008331. Ferritin_DPS_dom.
[Graphical view]
PfamiPF00210. Ferritin. 1 hit.
[Graphical view]
PIRSFiPIRSF005900. Dps. 1 hit.
PRINTSiPR01346. HELNAPAPROT.
SUPFAMiSSF47240. SSF47240. 1 hit.
PROSITEiPS00818. DPS_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0QXB7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSARRTESDI QGFHATPEFG GNLQKVLVDL IELSLQGKQA HWNVVGSNFR
60 70 80 90 100
DLHLQLDELV DFAREGSDTI AERMRALDAV PDGRSDTVAA TTTLPEFPAF
110 120 130 140 150
ERSTADVVDL ITTRINATVD TIRRVHDAVD AEDPSTADLL HGLIDGLEKQ
160
AWLIRSENRK V
Length:161
Mass (Da):17,833
Last modified:January 9, 2007 - v1
Checksum:iB1BF5DA440308260
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA. Translation: ABK69831.1.
CP001663 Genomic DNA. Translation: AFP39623.1.
RefSeqiWP_011728919.1. NZ_CP009494.1.
YP_887555.1. NC_008596.1.

Genome annotation databases

EnsemblBacteriaiABK69831; ABK69831; MSMEG_3242.
AFP39623; AFP39623; MSMEI_3159.
GeneIDi4534996.
KEGGimsb:LJ00_16120.
msg:MSMEI_3159.
msm:MSMEG_3242.
PATRICi18078913. VBIMycSme59918_3204.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA. Translation: ABK69831.1.
CP001663 Genomic DNA. Translation: AFP39623.1.
RefSeqiWP_011728919.1. NZ_CP009494.1.
YP_887555.1. NC_008596.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2Z90X-ray2.40A/B/C/D1-161[»]
4M32X-ray1.86A/B/C/D1-161[»]
4M33X-ray2.22A/B/C/D1-161[»]
4M34X-ray2.05A/B/C/D1-161[»]
4M35X-ray2.05A/B/C/D1-161[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246196.MSMEG_3242.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK69831; ABK69831; MSMEG_3242.
AFP39623; AFP39623; MSMEI_3159.
GeneIDi4534996.
KEGGimsb:LJ00_16120.
msg:MSMEI_3159.
msm:MSMEG_3242.
PATRICi18078913. VBIMycSme59918_3204.

Phylogenomic databases

eggNOGiENOG4107Y5Q. Bacteria.
COG0783. LUCA.
HOGENOMiHOG000273542.
KOiK04047.
OMAiLEQLAWM.
OrthoDBiEOG6Z9B6G.

Enzyme and pathway databases

BioCyciMSME246196:GJ4Y-3242-MONOMER.

Family and domain databases

Gene3Di1.20.1260.10. 1 hit.
InterProiIPR002177. DPS_DNA-bd.
IPR023188. DPS_DNA-bd_CS.
IPR009078. Ferritin-like_SF.
IPR012347. Ferritin-rel.
IPR008331. Ferritin_DPS_dom.
[Graphical view]
PfamiPF00210. Ferritin. 1 hit.
[Graphical view]
PIRSFiPIRSF005900. Dps. 1 hit.
PRINTSiPR01346. HELNAPAPROT.
SUPFAMiSSF47240. SSF47240. 1 hit.
PROSITEiPS00818. DPS_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MC2 155Imported.
  2. Hayward D., Fahey B.
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700084 / mc(2)155Imported and MC2 155Imported.
  3. "Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?"
    Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.M.
    Genome Biol. 8:R20.1-R20.9(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700084 / mc(2)155Imported and MC2 155Imported.
  4. "Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol."
    Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.
    Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700084 / mc(2)155Imported and MC2 155Imported.

Entry informationi

Entry nameiA0QXB7_MYCS2
AccessioniPrimary (citable) accession number: A0QXB7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: June 8, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.