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A0QWJ0 (A0QWJ0_MYCS2) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=2.6.1.19 EMBL AFP39349.1

4-aminobutyrate transaminase EMBL ABK73007.1
EC=2.6.1.19 EMBL ABK73007.1
Gene names
Name:gabT EMBL ABK73007.1
Ordered Locus Names:MSMEG_2959 EMBL ABK73007.1, MSMEI_2885 EMBL AFP39349.1
OrganismMycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [Reference proteome] [HAMAP] EMBL ABK73007.1
Taxonomic identifier246196 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length446 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequences

Sequence LengthMass (Da)Tools
A0QWJ0 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 5B94FA8EBC07306A

FASTA44646,926
        10         20         30         40         50         60 
MSHPEQSRHL ATAIPGPRSQ ALIDRKGTAV ARGVGTTMPV YAVRAGGGIV EDVDGNRLID 

        70         80         90        100        110        120 
LGSGIAVTTV GNSAPKVVEA VRSQVGDFTH TCFMVTPYEG YVAVCEQLNR LTPVRGDKRS 

       130        140        150        160        170        180 
ALFNSGSEAV ENAVKIARSH THKPAVVAFD HAYHGRTNLT MALTAKVMPY KDGFGPFAPE 

       190        200        210        220        230        240 
IYRAPLSYPF RDAEFGKELA TDGELAAKRA ITVIDKQIGA DNLAAVVIEP IQGEGGFIVP 

       250        260        270        280        290        300 
ADGFLPTLLD WCRKNDVVFI ADEVQTGFAR TGAMFACEHE GIDPDLIVTA KGIAGGLPLS 

       310        320        330        340        350        360 
AVTGRAEIMD SPHVSGLGGT YGGNPIACAA ALATIETIES EGLVARAQQI EKIMKDRLGR 

       370        380        390        400        410        420 
LQAEDDRIGD VRGRGAMIAM ELVKAGTTEP DADLTKALCA GAHAAGVIVL SCGTYGNVVR 

       430        440 
FLPPLSIGDD LLNEGLDVLE EVLRGA 

« Hide

References

« Hide 'large scale' references
[1]"ICDS database: interrupted CoDing sequences in prokaryotic genomes."
Perrodou E., Deshayes C., Muller J., Schaeffer C., Van Dorsselaer A., Ripp R., Poch O., Reyrat J.M., Lecompte O.
Nucleic Acids Res. 34:D338-D343(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MC2 155 EMBL AFP39349.1.
[2]Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL ABK73007.1.
[3]"Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?"
Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.M.
Genome Biol. 8:R20.1-R20.9(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP39349.1.
[4]"Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol."
Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.
Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155.
[5]"Crystal structure of 4-aminobutyrate transaminase from mycobacterium smegmatis."
Gardberg A., Sankaran B., Abendroth J., Staker B., SSGCID
Submitted (AUG-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 2-446.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000480 Genomic DNA. Translation: ABK73007.1.
CP001663 Genomic DNA. Translation: AFP39349.1.
RefSeqYP_006567644.1. NC_018289.1.
YP_887278.1. NC_008596.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3OKSX-ray1.80A/B/C/D2-446[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING246196.MSMEG_2959.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABK73007; ABK73007; MSMEG_2959.
AFP39349; AFP39349; MSMEI_2885.
GeneID13425252.
4532510.
KEGGmsg:MSMEI_2885.
msm:MSMEG_2959.
PATRIC18078348. VBIMycSme59918_2922.

Phylogenomic databases

eggNOGCOG0160.
HOGENOMHOG000020206.
KOK07250.
OMAMCSIVAN.
OrthoDBEOG6QVRHN.
ProtClustDBPRK06058.

Enzyme and pathway databases

BioCycMSME246196:GJ4Y-2959-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR00700. GABAtrnsam. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceA0QWJ0.

Entry information

Entry nameA0QWJ0_MYCS2
AccessionPrimary (citable) accession number: A0QWJ0
Entry history
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: April 16, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)