A0QV88 (A0QV88_MYCS2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL ABK71148.1
EC=2.6.1.19 EMBL ABK71148.1

Submitted name:
Aminotransferase EMBL AFP38895.1
EC=2.6.1.19 EMBL AFP38895.1

Gene names

Ordered Locus Names:

MSMEG_2487 EMBL ABK71148.1, MSMEI_2427 EMBL AFP38895.1

Organism

Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [Reference proteome] [HAMAP] EMBL ABK71148.1

Taxonomic identifier

246196 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium smegmatis

Protein attributes

Sequence length	417 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ABK71148.1 Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	metabolic process Inferred from electronic annotation. Source: GOC
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0QV88 [UniParc]. Last modified January 9, 2007. Version 1. Checksum: 28756732FA1A644D	FASTA	417	43,922
	10 20 30 40 50 60 MTELSQALKQ ATGVIAARGE GVLLYDEQDR RYLDFTAGIG VTSTGHCHPR VVEAAQRQVG 70 80 90 100 110 120 TLIHGQYTTV MHRPLLTLVE RLGEVLPAGL DRMFFANSGS EAIEAALRLS RQATGRPNVI 130 140 150 160 170 180 VFHGGFHGRT VAAASMTTSG TKFRSGFSPL MAGVHVSPFP DPTHFGWPVE QTTDFALSQL 190 200 210 220 230 240 DYVLQTVSAP ADTAAFFVEP VLGEGGYVPA NERFLAGLRE RADAHGILLV LDEVQTGYGR 250 260 270 280 290 300 TGKFWGGEHF DAKPDILVTA KGLASGFPLS GIAASSELMA KAWPGSQGGT YGANAVACAA 310 320 330 340 350 360 AIATLDVIAD ENLVANAAER GAQLKQALQT VADKHEQITD VRGLGLMIGN EFRDADGKPD 370 380 390 400 410 GTTAAAVQQE AARRGLLLLT CGAWGQVVRF IPALVVSADE VEEAAGIWAD AVSAVVS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"ICDS database: interrupted CoDing sequences in prokaryotic genomes." Perrodou E., Deshayes C., Muller J., Schaeffer C., Van Dorsselaer A., Ripp R., Poch O., Reyrat J.M., Lecompte O. Nucleic Acids Res. 34:D338-D343(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: MC2 155 EMBL AFP38895.1.
[2]	Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL ABK71148.1.
[3]	"Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?" Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.M. Genome Biol. 8:R20-R20(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP38895.1.
[4]	"Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol." Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O. Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP38895.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000480 Genomic DNA. Translation: ABK71148.1. CP001663 Genomic DNA. Translation: AFP38895.1.
RefSeq	YP_006567190.1. NC_018289.1. YP_886826.1. NC_008596.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	246196.MSMEG_2487.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABK71148; ABK71148; MSMEG_2487. AFP38895; AFP38895; MSMEI_2427.
GeneID	13428944. 4533529.
KEGG	msg:MSMEI_2427. msm:MSMEG_2487.
PATRIC	18077400. VBIMycSme59918_2452.
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K00823.
OMA	MAKAWPG.
ProtClustDB	CLSK643595.
Enzyme and pathway databases
BioCyc	MSME246196:GJ4Y-2487-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0QV88_MYCS2

Accession

Primary (citable) accession number: A0QV88

Entry history

Integrated into UniProtKB/TrEMBL:	January 9, 2007
Last sequence update:	January 9, 2007
Last modified:	May 1, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)