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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:MSMEG_1556, MSMEI_1519
OrganismiMycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Taxonomic identifieri246196 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
Proteomesi
  • UP000006158 Componenti: Chromosome
  • UP000000757 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_10000554162 – 14750S ribosomal protein L13Add BLAST146

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi246196.MSMEG_1556.

Structurei

Secondary structure

1147
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi15 – 19Combined sources5
Helixi25 – 37Combined sources13
Turni38 – 40Combined sources3
Beta strandi53 – 57Combined sources5
Helixi59 – 61Combined sources3
Helixi68 – 71Combined sources4
Beta strandi73 – 77Combined sources5
Beta strandi84 – 88Combined sources5
Helixi89 – 95Combined sources7
Helixi97 – 106Combined sources10
Helixi113 – 119Combined sources7
Beta strandi122 – 124Combined sources3
Beta strandi126 – 128Combined sources3
Helixi131 – 135Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5O60electron microscopy3.20K1-147[»]
5O61electron microscopy3.31K1-147[»]
5XYMelectron microscopy3.08J1-147[»]
ProteinModelPortaliA0QSP8.
SMRiA0QSP8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
HOGENOMiHOG000225286.
KOiK02871.
OMAiVLMGKHK.
OrthoDBiPOG091H013T.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR036899. Ribosomal_L13_sf.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A0QSP8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTYTPKAGD TTRSWYVIDA SDVVLGRLAS AAATLLRGKH KPTFTPNVDG
60 70 80 90 100
GDFVIVINAD KIAVSGDKLT KKFAYRHSGY PGGLRKRTIG ELLEKHPTRV
110 120 130 140
VENAIIGMLP HNKLGRQIQK KLKVYAGPDH PHAAQQPIPF EIKQVAQ
Length:147
Mass (Da):16,119
Last modified:January 9, 2007 - v1
Checksum:iBBE4AC000F9925B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA. Translation: ABK73633.1.
CP001663 Genomic DNA. Translation: AFP37992.1.
RefSeqiWP_003892944.1. NZ_CP009494.1.
YP_885936.1. NC_008596.1.

Genome annotation databases

EnsemblBacteriaiABK73633; ABK73633; MSMEG_1556.
AFP37992; AFP37992; MSMEI_1519.
GeneIDi4535125.
KEGGimsb:LJ00_07775.
msg:MSMEI_1519.
msm:MSMEG_1556.
PATRICifig|246196.19.peg.1542.

Similar proteinsi

Entry informationi

Entry nameiRL13_MYCS2
AccessioniPrimary (citable) accession number: A0QSP8
Secondary accession number(s): I7FYE6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 9, 2007
Last modified: November 22, 2017
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families