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Protein

50S ribosomal protein L23

Gene

rplW

Organism
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciMSME246196:GJ4Y-1438-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:MSMEG_1438, MSMEI_1402
OrganismiMycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Taxonomic identifieri246196 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
Proteomesi
  • UP000006158 Componenti: Chromosome
  • UP000000757 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved1 Publication
Chaini2 – 1009950S ribosomal protein L23PRO_1000068113Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi246196.MSMEG_1438.

Structurei

3D structure databases

ProteinModelPortaliA0QSD3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105KZR. Bacteria.
COG0089. LUCA.
HOGENOMiHOG000231366.
KOiK02892.
OMAiRVNTINR.
OrthoDBiPOG091H00TK.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A0QSD3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATITDPRDI ILAPVISEKS YGLIEDNVYT FVVHPDSNKT QIKIAIEKIF
60 70 80 90 100
DVKVDSVNTA NRQGKRKRTR TGFGKRKSTK RAIVKLAAGS KPIDLFGAPA
Length:100
Mass (Da):11,028
Last modified:January 9, 2007 - v1
Checksum:i7DBEF0FD4D647C20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA. Translation: ABK70487.1.
CP001663 Genomic DNA. Translation: AFP37875.1.
RefSeqiWP_003892825.1. NZ_CP009494.1.
YP_885821.1. NC_008596.1.

Genome annotation databases

EnsemblBacteriaiABK70487; ABK70487; MSMEG_1438.
AFP37875; AFP37875; MSMEI_1402.
GeneIDi4533062.
KEGGimsb:LJ00_07175.
msg:MSMEI_1402.
msm:MSMEG_1438.
PATRICi18075335. VBIMycSme59918_1424.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA. Translation: ABK70487.1.
CP001663 Genomic DNA. Translation: AFP37875.1.
RefSeqiWP_003892825.1. NZ_CP009494.1.
YP_885821.1. NC_008596.1.

3D structure databases

ProteinModelPortaliA0QSD3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246196.MSMEG_1438.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK70487; ABK70487; MSMEG_1438.
AFP37875; AFP37875; MSMEI_1402.
GeneIDi4533062.
KEGGimsb:LJ00_07175.
msg:MSMEI_1402.
msm:MSMEG_1438.
PATRICi18075335. VBIMycSme59918_1424.

Phylogenomic databases

eggNOGiENOG4105KZR. Bacteria.
COG0089. LUCA.
HOGENOMiHOG000231366.
KOiK02892.
OMAiRVNTINR.
OrthoDBiPOG091H00TK.

Enzyme and pathway databases

BioCyciMSME246196:GJ4Y-1438-MONOMER.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL23_MYCS2
AccessioniPrimary (citable) accession number: A0QSD3
Secondary accession number(s): I7F8J1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: January 9, 2007
Last modified: September 7, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.