A0QQ19 (A0QQ19_MYCS2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Bacterial regulatory protein, GntR family protein EMBL ABK74264.1

Submitted name:
GntR family transcriptional regulator EMBL AFP37061.1

Gene names

Ordered Locus Names:

MSMEG_0596 EMBL ABK74264.1, MSMEI_0580 EMBL AFP37061.1

Organism

Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [Reference proteome] [HAMAP] EMBL ABK74264.1

Taxonomic identifier

246196 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium smegmatis

Protein attributes

Sequence length	228 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH gntR-type DNA-binding domain. RuleBase RU000706 SAAS SAAS011711

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000706 SAAS SAAS011711
Ligand	DNA-binding RuleBase RU000706 SAAS SAAS011711
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0QQ19 [UniParc]. Last modified January 9, 2007. Version 1. Checksum: CCD6D92BA6FB98BB	FASTA	228	23,996
	10 20 30 40 50 60 MRAHELVLER IERDLVAGAI TVGDRLPPER ALAESLSVSR ASVREAIRVL EAMGVIRTAA 70 80 90 100 110 120 GSGPDAGAIV TADAATSIGS ALRLHTATRA LPIEDLVSTR ILLEASALRD AAALSPRPDL 130 140 150 160 170 180 AGINARLDAM DDPDLGPEEF HRLDAEFHVA LTALAGNVVV EAMMAALRGA IQGYILAGVP 190 200 210 220 RLADWGGVAA NLRCEHRRIV TALSRGQGNK AAELARAHIE GYVDLIKS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"ICDS database: interrupted CoDing sequences in prokaryotic genomes." Perrodou E., Deshayes C., Muller J., Schaeffer C., Van Dorsselaer A., Ripp R., Poch O., Reyrat J.M., Lecompte O. Nucleic Acids Res. 34:D338-D343(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: MC2 155 EMBL AFP37061.1.
[2]	Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL ABK74264.1.
[3]	"Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?" Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.M. Genome Biol. 8:R20-R20(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP37061.1.
[4]	"Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol." Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O. Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP37061.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000480 Genomic DNA. Translation: ABK74264.1. CP001663 Genomic DNA. Translation: AFP37061.1.
RefSeq	YP_006565356.1. NC_018289.1. YP_885007.1. NC_008596.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	246196.MSMEG_0596.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABK74264; ABK74264; MSMEG_0596. AFP37061; AFP37061; MSMEI_0580.
GeneID	13427750. 4537090.
KEGG	msg:MSMEI_0580. msm:MSMEG_0596.
PATRIC	18073660. VBIMycSme59918_0592.
Phylogenomic databases
eggNOG	COG2186.
HOGENOM	HOG000273991.
OMA	LDAQFHV.
ProtClustDB	CLSK955701.
Enzyme and pathway databases
BioCyc	MSME246196:GJ4Y-596-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR011711. GntR_C. IPR000524. Tscrpt_reg_HTH_GntR. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF07729. FCD. 1 hit. PF00392. GntR. 1 hit. [Graphical view]
PRINTS	PR00035. HTHGNTR.
SMART	SM00895. FCD. 1 hit. SM00345. HTH_GNTR. 1 hit. [Graphical view]
PROSITE	PS50949. HTH_GNTR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0QQ19_MYCS2

Accession

Primary (citable) accession number: A0QQ19

Entry history

Integrated into UniProtKB/TrEMBL:	January 9, 2007
Last sequence update:	January 9, 2007
Last modified:	May 1, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)