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A0QQ04 (A0QQ04_MYCS2) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=2.6.1.19 EMBL AFP37047.1

4-aminobutyrate transaminase EMBL ABK69652.1
EC=2.6.1.19 EMBL ABK69652.1
Gene names
Name:gabT EMBL ABK69652.1
Ordered Locus Names:MSMEG_0581 EMBL ABK69652.1, MSMEI_0566 EMBL AFP37047.1
OrganismMycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [Reference proteome] [HAMAP] EMBL ABK69652.1
Taxonomic identifier246196 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length448 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequences

Sequence LengthMass (Da)Tools
A0QQ04 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 2F846454C81E6B7F

FASTA44846,490
        10         20         30         40         50         60 
MTIAEIAGRT LTQERRLVTA IPGPISQELQ ARKQSAVAAG VGVTLPVYVV AAGGGVLADA 

        70         80         90        100        110        120 
DGNQLIDFGS GIAVTTVGNS APAVVDAVTQ QVAAFTHTCF MVTPYEGYVK VAEHLNRLTP 

       130        140        150        160        170        180 
GDHEKRTALF NSGAEAVENA VKIARAYTRR QAVVVFDHAY HGRTNLTMAM TAKNQPYKHG 

       190        200        210        220        230        240 
FGPFANEVYR VPTSYPFRDG ETDGAAAAAH ALDLINKQVG ADNVAAVVIE PVHGEGGFVV 

       250        260        270        280        290        300 
PAPGFLGALQ KWCTDNGAVF VADEVQTGFA RTGALFACEH ENVVPDLIVT AKGIAGGLPL 

       310        320        330        340        350        360 
SAVTGRAEIM DGPQSGGLGG TYGGNPLACA AALAVIDTIE RENLVARARA IGETMLSRLG 

       370        380        390        400        410        420 
ALAAADPRIG EVRGRGAMIA VELVKPGTTE PDADLTKRVA AAAHAQGLVV LTCGTYGNVL 

       430        440 
RFLPPLSMPD HLLDEGLDIL AAVFAEVK 

« Hide

References

« Hide 'large scale' references
[1]"ICDS database: interrupted CoDing sequences in prokaryotic genomes."
Perrodou E., Deshayes C., Muller J., Schaeffer C., Van Dorsselaer A., Ripp R., Poch O., Reyrat J.M., Lecompte O.
Nucleic Acids Res. 34:D338-D343(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MC2 155 EMBL AFP37047.1.
[2]Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL ABK69652.1.
[3]"Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?"
Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.M.
Genome Biol. 8:R20.1-R20.9(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP37047.1.
[4]"Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol."
Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.
Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155.
[5]"Crystal structure of 4-aminobutyrate transaminase from Mycobacterium smegmatis."
Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Gardberg A., Edwards T., Staker B., Stewart L.
Submitted (JAN-2011) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 2-448.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000480 Genomic DNA. Translation: ABK69652.1.
CP001663 Genomic DNA. Translation: AFP37047.1.
RefSeqYP_006565342.1. NC_018289.1.
YP_884992.1. NC_008596.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3Q8NX-ray2.05A/B/C/D2-448[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING246196.MSMEG_0581.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABK69652; ABK69652; MSMEG_0581.
AFP37047; AFP37047; MSMEI_0566.
GeneID13427736.
4536614.
KEGGmsg:MSMEI_0566.
msm:MSMEG_0581.
PATRIC18073632. VBIMycSme59918_0578.

Phylogenomic databases

eggNOGCOG0160.
HOGENOMHOG000020206.
KOK07250.
OMASENLCER.
OrthoDBEOG6QVRHN.

Enzyme and pathway databases

BioCycMSME246196:GJ4Y-581-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR00700. GABAtrnsam. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceA0QQ04.

Entry information

Entry nameA0QQ04_MYCS2
AccessionPrimary (citable) accession number: A0QQ04
Entry history
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: April 16, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)