A0QP88 (A0QP88_MYCS2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase EMBL ABK75471.1
EC=4.1.2.14 EMBL ABK75471.1
EC=4.1.3.16 EMBL ABK75471.1

Gene names

Name:	eda EMBL ABK75471.1
Ordered Locus Names:	MSMEG_0312 EMBL ABK75471.1, MSMEI_0305 EMBL AFP36786.1

Organism

Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [Reference proteome] [HAMAP] EMBL ABK75471.1

Taxonomic identifier

246196 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium smegmatis

Protein attributes

Sequence length	209 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ABK75471.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	2-dehydro-3-deoxy-phosphogluconate aldolase activity Inferred from electronic annotation. Source: EC 4-hydroxy-2-oxoglutarate aldolase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0QP88 [UniParc]. Last modified January 9, 2007. Version 1. Checksum: 40A8B6318A34836A	FASTA	209	21,496
	10 20 30 40 50 60 MSLDSLLDLV PVIPVVVVHD AADAVPIAKA LVEGGLPVIE LTLRTPAALD AIKRIADEVP 70 80 90 100 110 120 EILVGAGTVV DSAQPEQAAA NGAQFLVSPG STPSLRAAMR DSGLPHLPGV STVSEVLTLL 130 140 150 160 170 180 EEGYTELKFF PAEQAGGAKY LRAIHSPVPA ARFCPTGGIT PANMGDYLAS PNVGCVGGSW 190 200 LTPADVVGRK DWAEVARLAR TAKAAAEAF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"ICDS database: interrupted CoDing sequences in prokaryotic genomes." Perrodou E., Deshayes C., Muller J., Schaeffer C., Van Dorsselaer A., Ripp R., Poch O., Reyrat J.M., Lecompte O. Nucleic Acids Res. 34:D338-D343(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: MC2 155 EMBL AFP36786.1.
[2]	Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL ABK75471.1.
[3]	"Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?" Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.M. Genome Biol. 8:R20-R20(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP36786.1.
[4]	"Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol." Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O. Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP36786.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000480 Genomic DNA. Translation: ABK75471.1. CP001663 Genomic DNA. Translation: AFP36786.1.
RefSeq	YP_006565081.1. NC_018289.1. YP_884726.1. NC_008596.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	246196.MSMEG_0312.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABK75471; ABK75471; MSMEG_0312. AFP36786; AFP36786; MSMEI_0305.
GeneID	13426827. 4535550.
KEGG	msg:MSMEI_0305. msm:MSMEG_0312.
PATRIC	18073094. VBIMycSme59918_0309.
Phylogenomic databases
eggNOG	COG0800.
HOGENOM	HOG000233114.
KO	K01625.
OMA	AQFAVSP.
ProtClustDB	CLSK2468905.
Enzyme and pathway databases
BioCyc	MSME246196:GJ4Y-312-MONOMER.
Family and domain databases
Gene3D	3.20.20.70. 1 hit.
InterPro	IPR000887. Aldlse_KDPG_KHG. IPR013785. Aldolase_TIM. [Graphical view]
Pfam	PF01081. Aldolase. 1 hit. [Graphical view]
TIGRFAMs	TIGR01182. eda. 1 hit.
PROSITE	PS00159. ALDOLASE_KDPG_KHG_1. 1 hit. PS00160. ALDOLASE_KDPG_KHG_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0QP88_MYCS2

Accession

Primary (citable) accession number: A0QP88

Entry history

Integrated into UniProtKB/TrEMBL:	January 9, 2007
Last sequence update:	January 9, 2007
Last modified:	May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)