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A0QP06 (A0QP06_MYCS2) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Dihydroxy-acid dehydratase HAMAP-Rule MF_00012
Short name=DAD HAMAP-Rule MF_00012
EC=4.2.1.9 HAMAP-Rule MF_00012
Gene names
Name:ilvD HAMAP-Rule MF_00012 EMBL ABK73424.1
Ordered Locus Names:MSMEG_0229 EMBL ABK73424.1, MSMEI_0222 EMBL AFP36703.1
OrganismMycobacterium smegmatis (strain ATCC 700084 / mc(2)155) [Reference proteome] [HAMAP] EMBL ABK73424.1
Taxonomic identifier246196 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium ›

Protein attributes

Sequence length571 AA.
Sequence statusComplete.
Protein existenceInferred from homology

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding1331Iron-sulfur (4Fe-4S) By similarity HAMAP-Rule MF_00012
Metal binding2101Iron-sulfur (4Fe-4S) By similarity HAMAP-Rule MF_00012

Sequences

Sequence LengthMass (Da)Tools
A0QP06 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 0A89C33B0B7190CC

FASTA57159,950
        10         20         30         40         50         60 
MPSDDKSTET PDIKPRSRDV TDGLEKAAAR GMLRAVGMGD ADWAKPQIGV GSSWNEITPC 

        70         80         90        100        110        120 
NMSLQRLAKS VKDGVHEAGG YPLEFGTISV SDGISMGHEG MHFSLVSREV IADSVETVVQ 

       130        140        150        160        170        180 
AERLDGTVLL AGCDKSIPGM LMAAARLDLA SVFFYNGSIM PGVAKLTDGT EKEVTIIDAF 

       190        200        210        220        230        240 
EAVGACVRGL MSREDVDIIE RAICPGEGAC GGMYTANTMA SAAEALGLSL PGSASPVAID 

       250        260        270        280        290        300 
KRRDEFARRS GEAVVDMLRR GITARDILTK EAFENAIAVV MAFGGSTNAV LHLLAIAREA 

       310        320        330        340        350        360 
EVELTLDDFT RVGSKVPHLA DVKPFGRHVM KHVDEIGGVP VVMRALLDAG LLNGECLTVT 

       370        380        390        400        410        420 
GKTMAENLAH IAPPDPDGKV LRAMNNPIHP TGGITILHGS LAPEGAVVKS AGFDSDVFEG 

       430        440        450        460        470        480 
TARVFDRERA AMDALEDGTI QAGDVVVIRY EGPKGGPGMR EMLAITGAIK GAGLGKDVLL 

       490        500        510        520        530        540 
MTDGRFSGGT TGLCVGHIAP EAVDGGPIAF VRDGDRIRLD VAKGTLDVLV DEEEFEARKA 

       550        560        570 
GFEPLPPRYK TGVLAKYTKL VQSAAVGAVC T

« Hide

References

« Hide 'large scale' references
[1]"ICDS database: interrupted CoDing sequences in prokaryotic genomes."
Perrodou E., Deshayes C., Muller J., Schaeffer C., Van Dorsselaer A., Ripp R., Poch O., Reyrat J.M., Lecompte O.
Nucleic Acids Res. 34:D338-D343(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: MC2 155 EMBL AFP36703.1.
[2]Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL ABK73424.1.
[3]"Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?"
Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.M.
Genome Biol. 8:R20-R20(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP36703.1.
[4]"Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol."
Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.
Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700084 / mc(2)155 and MC2 155 EMBL AFP36703.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000480 Genomic DNA. Translation: ABK73424.1.
CP001663 Genomic DNA. Translation: AFP36703.1.
RefSeqYP_006564998.1. NC_018289.1.
YP_884644.1. NC_008596.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING246196.MSMEG_0229.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABK73424; ABK73424; MSMEG_0229.
AFP36703; AFP36703; MSMEI_0222.
GeneID13426744.
4534428.
KEGGmsg:MSMEI_0222.
msm:MSMEG_0229.
PATRIC18072925. VBIMycSme59918_0225.

Phylogenomic databases

eggNOGCOG0129.
HOGENOMHOG000173155.
KOK01687.
OMAKATGHLQ.
ProtClustDBPRK00911.

Enzyme and pathway databases

BioCycMSME246196:GJ4Y-229-MONOMER.
UniPathwayUPA00047; UER00057.
UPA00049; UER00061.

Family and domain databases

HAMAPMF_00012. IlvD.
InterProIPR015928. Aconitase/3IPM_dehydase_swvl.
IPR004404. DihydroxyA_deHydtase.
IPR000581. DiOHA_6PGluconate_deHydtase.
IPR020558. DiOHA_6PGluconate_deHydtase_CS.
[Graphical view]
PANTHERPTHR21000. PTHR21000. 1 hit.
PfamPF00920. ILVD_EDD. 1 hit.
[Graphical view]
SUPFAMSSF52016. Aconitase/3IPM_dehydase_swvl. 1 hit.
TIGRFAMsTIGR00110. ilvD. 1 hit.
PROSITEPS00886. ILVD_EDD_1. 1 hit.
PS00887. ILVD_EDD_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA0QP06_MYCS2
AccessionPrimary (citable) accession number: A0QP06
Entry history
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: May 1, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info