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A0QL48 (RPOC_MYCA1) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA-directed RNA polymerase subunit beta'
Short name=RNAP subunit beta'
EC=2.7.7.6
Alternative name(s):
RNA polymerase subunit beta'
Transcriptase subunit beta'
Gene names
Name:rpoC
Ordered Locus Names:MAV_4502
OrganismMycobacterium avium (strain 104) [Complete proteome] [HAMAP]
Taxonomic identifier243243 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium avium complex (MAC) ›

Protein attributes

Sequence length1316 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity. HAMAP-Rule MF_01322

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). HAMAP-Rule MF_01322

Subunit structure

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity.

Sequence similarities

Belongs to the RNA polymerase beta' chain family.

Ontologies

Keywords
   Biological processTranscription
   Cellular componentDNA-directed RNA polymerase
   Molecular functionNucleotidyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranscription, DNA-dependent

Inferred from electronic annotation. Source: HAMAP

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: HAMAP

DNA-directed RNA polymerase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 13161316DNA-directed RNA polymerase subunit beta' HAMAP-Rule MF_01322
PRO_0000308853

Sequences

Sequence LengthMass (Da)Tools
A0QL48 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 88C8A6CB695B4254

FASTA1,316147,028
        10         20         30         40         50         60 
MLDVNFFDEL RIGLATAEDI RQWSYGEVKK PETINYRTLK PEKDGLFCEK IFGPTRDWEC 

        70         80         90        100        110        120 
YCGKYKRVRF KGIICERCGV EVTRAKVRRE RMGHIELAAP VTHIWYFKGV PSRLGYLLDL 

       130        140        150        160        170        180 
APKDLEKIIY FAAYVITSVD EEMRHNELST LEAEMMVERK AVEDQRDADL EARAQKLEAD 

       190        200        210        220        230        240 
LAELEAEGAK ADARRKVRDS GEREMRQIRD RAQRELDRLE DIWNTFTKLA PKQLIVDENL 

       250        260        270        280        290        300 
YRELVDRYGE YFTGAMGAES IQKLIENFDI DAEAEQLRDV IRNGKGQKKL RALKRLKVVA 

       310        320        330        340        350        360 
AFQQSGNSPM GMVLDAVPVI PPELRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLIDL 

       370        380        390        400        410        420 
GAPEIIVNNE KRMLQESVDA LFDNGRRGRP VTGPGNRPLK SLSDLLKGKQ GRFRQNLLGK 

       430        440        450        460        470        480 
RVDYSGRSVI VVGPQLKLHQ CGLPKLMALE LFKPFVMKRL VDLNHAQNIK SAKRMVERQR 

       490        500        510        520        530        540 
PQVWDVLEEV IAEHPVLLNR APTLHRLGIQ AFEPMLVEGK AIQLHPLVCE AFNADFDGDQ 

       550        560        570        580        590        600 
MAVHLPLSAE AQAEARILML SSNNILSPAS GRPLAMPRLD MVTGLYYLTT EVEGDKGEYR 

       610        620        630        640        650        660 
PAAKDTPEVG VYSSPAEAIM AADRGVLSVR AKIKVRLTQL RPPAEIEAEL FGANGWQPGD 

       670        680        690        700        710        720 
AWMAETTLGR VLFNELLPVG YPFVNKQMHK KVQASIINDL AERYPMIVVA QTVDKLKDAG 

       730        740        750        760        770        780 
FYWATRSGVT VSMADVLVPP RKKEILDQYE ERAEKVEKQF QRGALNHDER NEALVEIWKE 

       790        800        810        820        830        840 
ATDEVGQALR EHYPADNPII TIVDSGATGN FTQTRTLAGM KGLVTNPKGE FIPRPVKSSF 

       850        860        870        880        890        900 
REGLTVLEYF INTHGARKGL ADTALRTADS GYLTRRLVDV SQDVIVREHD CETERGIVVE 

       910        920        930        940        950        960 
LAERQPDGTL IRDPYIETSA YARTLGTDAV DEAGNVIVAR GEDLGDPEID ALLAAGITSV 

       970        980        990       1000       1010       1020 
KVRSVLTCTT GTGVCATCYG RSMATGKLVD IGEAVGIVAA QSIGEPGTQL TMRTFHQGGV 

      1030       1040       1050       1060       1070       1080 
GEDITGGLPR VQELFEARIP RGKAPIADVT GRVRLEDGER FYKITIVPDD GSEEVVYDKL 

      1090       1100       1110       1120       1130       1140 
SKRQRLRVFK HEDGSERVLS DGDHVEVGQQ LMEGSADPHE VLRVQGPREV QIHLVREVQE 

      1150       1160       1170       1180       1190       1200 
VYRAQGVSIH DKHIEVIVRQ MLRRVTIIDS GSTEFLPGSL IDRAEFEAEN RRVVAEGGEP 

      1210       1220       1230       1240       1250       1260 
AAGRPVLMGI TKASLATDSW LSAASFQETT RVLTDAAINC RSDKLNGLKE NVIIGKLIPA 

      1270       1280       1290       1300       1310 
GTGINRYRNI QVQPTEEARA AAYTIPSYED QYYSPDFGQA TGAAVPLDDY GYSDYR

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References

[1]Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 104.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000479 Genomic DNA. Translation: ABK69395.1.
RefSeqYP_883636.1. NC_008595.1.

3D structure databases

ProteinModelPortalA0QL48.
SMRA0QL48. Positions 9-136.
ModBaseSearch...

Protein-protein interaction databases

STRING243243.MAV_4502.

Proteomic databases

PRIDEA0QL48.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABK69395; ABK69395; MAV_4502.
GeneID4529592.
KEGGmav:MAV_4502.
PATRIC17990697. VBIMycAvi38287_4422.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0086.
HOGENOMHOG000218386.
KOK03046.
OMADINDKHI.
ProtClustDBPRK00566.

Enzyme and pathway databases

BioCycMAVI243243:GH3Y-4502-MONOMER.

Family and domain databases

Gene3D2.40.40.20. 2 hits.
HAMAPMF_01322. RNApol_bact_RpoC.
InterProIPR009010. Asp_de-COase-like_dom.
IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR02386. rpoC_TIGR. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRPOC_MYCA1
AccessionPrimary (citable) accession number: A0QL48
Entry history
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: January 9, 2007
Last modified: May 29, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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