A0QJ67 (A0QJ67_MYCA1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribonuclease III EMBL ABK64598.1
EC=3.1.26.3 EMBL ABK64598.1

Gene names

Name:	rnc EMBL ABK64598.1
Ordered Locus Names:	MAV_3783

Organism

Mycobacterium avium (strain 104) [Complete proteome] [HAMAP]

Taxonomic identifier

243243 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium avium complex (MAC)

Protein attributes

Sequence length	237 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs By similarity. SAAS SAAS011907
Catalytic activity	Endonucleolytic cleavage to 5'-phosphomonoester. SAAS SAAS011907
Subcellular location	Cytoplasm By similarity SAAS SAAS011907.
Sequence similarities	Contains 1 DRBM (double-stranded RNA-binding) domain. SAAS SAAS011907 Contains 1 RNase III domain. SAAS SAAS011907

Ontologies

Keywords
Cellular component	Cytoplasm SAAS SAAS011907
Ligand	RNA-binding SAAS SAAS011907
Molecular function	Endonuclease SAAS SAAS011907 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	RNA processing Inferred from electronic annotation. Source: InterPro rRNA catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	double-stranded RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease III activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0QJ67 [UniParc]. Last modified January 9, 2007. Version 1. Checksum: F2C678E6668DE570	FASTA	237	24,899
	10 20 30 40 50 60 MSSRQPLLDA LGVELPDELL SLALTHRSYA YEHGGLPTNE RLEFLGDAVL GLTITDALYH 70 80 90 100 110 120 RHPDRTEGDL AKLRASVVNT QALADVARKL CDGGLGAHLL LGRGEANTGG ADKSSILADG 130 140 150 160 170 180 MESLLGAIYL QHGIDTAREV ILRLFGALLD AAPTLGAGLD WKTSLQELTA ARGMGAPSYL 190 200 210 220 230 VTSTGPDHDK EFTAVVVVAD TEYGTGVGRS KKEAEQKAAA ATWKALDVLD PAAQTSA

References

[1]	Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000479 Genomic DNA. Translation: ABK64598.1.
RefSeq	YP_882955.1. NC_008595.1.
3D structure databases
ProteinModelPortal	A0QJ67.
SMR	A0QJ67. Positions 1-154.
ModBase	Search...
Protein-protein interaction databases
STRING	A0QJ67.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBMYCT00000012569; EBMYCP00000012455; EBMYCG00000012567.
GeneID	4525724.
GenomeReviews	Gene locus MAV_3783 in contig CP000479_GR.
KEGG	mav:MAV_3783.
PATRIC	17989249. VBIMycAvi38287_3704.
TIGR	MAV_3783.
Phylogenomic databases
eggNOG	COG0571.
GeneTree	EBGT00050000017732.
HOGENOM	HBG744556.
OMA	ALTHKSF.
PhylomeDB	A0QJ67.
ProtClustDB	PRK00102.
Family and domain databases
HAMAP	MF_00104. RNase_III. [Tree]
InterPro	IPR001159. Ds-RNA-bd. IPR014720. dsRNA-bd-like. IPR000999. RNase_III. IPR011907. RNase_III_bac. [Graphical view]
Gene3D	G3DSA:3.30.160.20. dsRNA-bd-like. 1 hit. G3DSA:1.10.1520.10. RNase_III. 1 hit.
KO	K03685.
PANTHER	PTHR11207. PTHR11207. 1 hit.
Pfam	PF00035. dsrm. 1 hit. PF00636. Ribonuclease_3. 1 hit. [Graphical view]
SMART	SM00358. DSRM. 1 hit. SM00535. RIBOc. 1 hit. [Graphical view]
SUPFAM	SSF69065. RNase_III. 1 hit.
TIGRFAMs	TIGR02191. RNaseIII. 1 hit.
PROSITE	PS50137. DS_RBD. 1 hit. PS00517. RNASE_3_1. 1 hit. PS50142. RNASE_3_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0QJ67_MYCA1

Accession

Primary (citable) accession number: A0QJ67

Entry history

Integrated into UniProtKB/TrEMBL:	January 9, 2007
Last sequence update:	January 9, 2007
Last modified:	December 14, 2011
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)