A0QJ46 (RIMM_MYCA1) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosome maturation factor rimM

Gene names

Name:	rimM
Ordered Locus Names:	MAV_3762

Organism

Mycobacterium avium (strain 104) [Complete proteome] [HAMAP]

Taxonomic identifier

243243 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium › Mycobacterium avium complex (MAC)

Protein attributes

Sequence length	175 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP MF_00014
Subcellular location	Cytoplasm By similarity HAMAP MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014
Sequence similarities	Belongs to the rimM family. Contains 1 PRC barrel domain.

Ontologies

Keywords
Biological process	Ribosome biogenesis
Cellular component	Cytoplasm
Molecular function	Chaperone
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 175	175	Ribosome maturation factor rimM HAMAP MF_00014		PRO_1000001195
Regions
	Domain	96 – 172	77	PRC barrel

Sequences

	Sequence		Length	Mass (Da)
	A0QJ46 [UniParc]. Last modified January 9, 2007. Version 1. Checksum: DACF67CDC039013E	FASTA	175	18,495
	10 20 30 40 50 60 MELTVGRVVK AHGISGEIVV EIRTDDPAAR FAPGNTLRAK PSRGGPERSC VIESAREHGG 70 80 90 100 110 120 RLLVRLAGVT DRDAADALRG TLFVVDSAEL PDIDEPDTYY DHQLEGLQVR TTGGQRVGAV 130 140 150 160 170 AEVLHTAAGE LLAVRDDADG APREVLVPFV SAIVTAVSLD DGLIEIDPPD GLLDL

References

[1]	Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 104.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000479 Genomic DNA. Translation: ABK65907.1.
RefSeq	YP_882934.1. NC_008595.1.
3D structure databases
ProteinModelPortal	A0QJ46.
ModBase	Search...
Protein-protein interaction databases
STRING	A0QJ46.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBMYCT00000013164; EBMYCP00000013050; EBMYCG00000013162.
GeneID	4528073.
GenomeReviews	Gene locus MAV_3762 in contig CP000479_GR.
KEGG	mav:MAV_3762.
PATRIC	17989207. VBIMycAvi38287_3683.
TIGR	MAV_3762.
Phylogenomic databases
eggNOG	COG0806.
GeneTree	EBGT00050000017443.
HOGENOM	HBG703775.
OMA	PDEFYDH.
PhylomeDB	A0QJ46.
ProtClustDB	PRK00122.
Enzyme and pathway databases
BioCyc	MAVI243243:MAV_3762-MONOMER.
Family and domain databases
HAMAP	MF_00014. Ribosome_mat_RimM. [Tree]
InterPro	IPR011961. 16S_RimM. IPR007903. PRC_barrel. IPR011033. PRC_barrell-like. IPR002676. RimM. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Gene3D	G3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KO	K02860.
Pfam	PF05239. PRC. 1 hit. PF01782. RimM. 1 hit. [Graphical view]
SUPFAM	SSF50346. PRCH_cytoplasmic. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR02273. 16S_RimM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RIMM_MYCA1

Accession

Primary (citable) accession number: A0QJ46

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	January 9, 2007
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program