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A0QHE4 (A0QHE4_MYCA1) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ABK68815.1
Gene names
Name:ligD EMBL ABK68815.1
Ordered Locus Names:MAV_3148 EMBL ABK68815.1
OrganismMycobacterium avium (strain 104) [Complete proteome] [HAMAP] EMBL ABK68815.1
Taxonomic identifier243243 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)

Protein attributes

Sequence length332 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABK68815.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A0QHE4 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 6C9D7DDC35AF0611

FASTA33237,732
        10         20         30         40         50         60 
MTDFAALPDS VRAALRDEPV PQWCSPTLAT LTEQRFSDPH WIFERKFDGM RCLAFRDGDR 

        70         80         90        100        110        120 
VRLLSRNRKP LNGTYPELVE ALAAQRETRF VLDGEVVAFE GRRTSFARLQ GRLGITDPDV 

       130        140        150        160        170        180 
ARASSVRIYY YVFDLLHLDG KSTVAVPLIW RKRLLRKAID FTDPLRYAPH RVGDGMAAYR 

       190        200        210        220        230        240 
AACGRGDEGV IAKRAESAYD GRRSENWLKF KCVRDQEFVV GGYTSPKGKR LELGALLLGY 

       250        260        270        280        290        300 
YQGDQLRYAG KVGTGFDEAT LHRLHQLLSG IACDTTPFTR SLVPEAGAHW VRPELVVQIG 

       310        320        330 
FTEWTRDGKL RHPRYLGIRT DKDPTEVIRE TR 

« Hide

References

[1]Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 104 EMBL ABK68815.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000479 Genomic DNA. Translation: ABK68815.1.
RefSeqYP_882332.1. NC_008595.1.

3D structure databases

ProteinModelPortalA0QHE4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING243243.MAV_3148.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABK68815; ABK68815; MAV_3148.
GeneID4526987.
KEGGmav:MAV_3148.
PATRIC17987987. VBIMycAvi38287_3079.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222509.
KOK01971.
OMAVEVKYGQ.
OrthoDBEOG661H49.
ProtClustDBCLSK820690.

Enzyme and pathway databases

BioCycMAVI243243:GH3Y-3148-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA0QHE4_MYCA1
AccessionPrimary (citable) accession number: A0QHE4
Entry history
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: November 13, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)