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A0QHE4

- A0QHE4_MYCA1

UniProt

A0QHE4 - A0QHE4_MYCA1

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Protein
Submitted name:

DNA polymerase LigD, ligase domain

Gene

ligD

Organism
Mycobacterium avium (strain 104)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMAVI243243:GH3Y-3148-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domainImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:MAV_3148Imported
OrganismiMycobacterium avium (strain 104)Imported
Taxonomic identifieri243243 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000001574: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi243243.MAV_3148.

Structurei

3D structure databases

ProteinModelPortaliA0QHE4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiWEGLIAK.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0QHE4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTDFAALPDS VRAALRDEPV PQWCSPTLAT LTEQRFSDPH WIFERKFDGM
60 70 80 90 100
RCLAFRDGDR VRLLSRNRKP LNGTYPELVE ALAAQRETRF VLDGEVVAFE
110 120 130 140 150
GRRTSFARLQ GRLGITDPDV ARASSVRIYY YVFDLLHLDG KSTVAVPLIW
160 170 180 190 200
RKRLLRKAID FTDPLRYAPH RVGDGMAAYR AACGRGDEGV IAKRAESAYD
210 220 230 240 250
GRRSENWLKF KCVRDQEFVV GGYTSPKGKR LELGALLLGY YQGDQLRYAG
260 270 280 290 300
KVGTGFDEAT LHRLHQLLSG IACDTTPFTR SLVPEAGAHW VRPELVVQIG
310 320 330
FTEWTRDGKL RHPRYLGIRT DKDPTEVIRE TR
Length:332
Mass (Da):37,732
Last modified:January 9, 2007 - v1
Checksum:i6C9D7DDC35AF0611
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000479 Genomic DNA. Translation: ABK68815.1.
RefSeqiYP_882332.1. NC_008595.1.

Genome annotation databases

EnsemblBacteriaiABK68815; ABK68815; MAV_3148.
GeneIDi4526987.
KEGGimav:MAV_3148.
PATRICi17987987. VBIMycAvi38287_3079.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000479 Genomic DNA. Translation: ABK68815.1 .
RefSeqi YP_882332.1. NC_008595.1.

3D structure databases

ProteinModelPortali A0QHE4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 243243.MAV_3148.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK68815 ; ABK68815 ; MAV_3148 .
GeneIDi 4526987.
KEGGi mav:MAV_3148.
PATRICi 17987987. VBIMycAvi38287_3079.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi WEGLIAK.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci MAVI243243:GH3Y-3148-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 104Imported.

Entry informationi

Entry nameiA0QHE4_MYCA1
AccessioniPrimary (citable) accession number: A0QHE4
Entry historyi
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: October 29, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3