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A0QHE4

- A0QHE4_MYCA1

UniProt

A0QHE4 - A0QHE4_MYCA1

Protein
Submitted name:

DNA polymerase LigD, ligase domain

Gene

ligD

Organism
Mycobacterium avium (strain 104)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (09 Jan 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMAVI243243:GH3Y-3148-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, ligase domainImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:MAV_3148Imported
    OrganismiMycobacterium avium (strain 104)Imported
    Taxonomic identifieri243243 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
    ProteomesiUP000001574: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi243243.MAV_3148.

    Structurei

    3D structure databases

    ProteinModelPortaliA0QHE4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiWEGLIAK.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A0QHE4-1 [UniParc]FASTAAdd to Basket

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    MTDFAALPDS VRAALRDEPV PQWCSPTLAT LTEQRFSDPH WIFERKFDGM    50
    RCLAFRDGDR VRLLSRNRKP LNGTYPELVE ALAAQRETRF VLDGEVVAFE 100
    GRRTSFARLQ GRLGITDPDV ARASSVRIYY YVFDLLHLDG KSTVAVPLIW 150
    RKRLLRKAID FTDPLRYAPH RVGDGMAAYR AACGRGDEGV IAKRAESAYD 200
    GRRSENWLKF KCVRDQEFVV GGYTSPKGKR LELGALLLGY YQGDQLRYAG 250
    KVGTGFDEAT LHRLHQLLSG IACDTTPFTR SLVPEAGAHW VRPELVVQIG 300
    FTEWTRDGKL RHPRYLGIRT DKDPTEVIRE TR 332
    Length:332
    Mass (Da):37,732
    Last modified:January 9, 2007 - v1
    Checksum:i6C9D7DDC35AF0611
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000479 Genomic DNA. Translation: ABK68815.1.
    RefSeqiWP_011725290.1. NC_008595.1.
    YP_882332.1. NC_008595.1.

    Genome annotation databases

    EnsemblBacteriaiABK68815; ABK68815; MAV_3148.
    GeneIDi4526987.
    KEGGimav:MAV_3148.
    PATRICi17987987. VBIMycAvi38287_3079.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000479 Genomic DNA. Translation: ABK68815.1 .
    RefSeqi WP_011725290.1. NC_008595.1.
    YP_882332.1. NC_008595.1.

    3D structure databases

    ProteinModelPortali A0QHE4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 243243.MAV_3148.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABK68815 ; ABK68815 ; MAV_3148 .
    GeneIDi 4526987.
    KEGGi mav:MAV_3148.
    PATRICi 17987987. VBIMycAvi38287_3079.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi WEGLIAK.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci MAVI243243:GH3Y-3148-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
      Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 104Imported.

    Entry informationi

    Entry nameiA0QHE4_MYCA1
    AccessioniPrimary (citable) accession number: A0QHE4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 9, 2007
    Last sequence update: January 9, 2007
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3