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A0QBM3

- A0QBM3_MYCA1

UniProt

A0QBM3 - A0QBM3_MYCA1

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Protein
Submitted name: DNA ligase
Gene
MAV_1056
Organism
Mycobacterium avium (strain 104)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMAVI243243:GH3Y-1056-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:MAV_1056Imported
OrganismiMycobacterium avium (strain 104)Imported
Taxonomic identifieri243243 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000001574: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi243243.MAV_1056.

Structurei

3D structure databases

ProteinModelPortaliA0QBM3.
SMRiA0QBM3. Positions 16-300, 460-766.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0QBM3-1 [UniParc]FASTAAdd to Basket

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MNAPRAWPAE PTATPRVKLT NADKVLYPAT GTTKADVFDY YTRIADVMIP    50
HIAGRPVTRK RWPNGVDQES FFEKQLASSA PDWLPRASVT HRSGTTTYPI 100
IDSATGLAWI AQQAALEVHV PQWRFVAEWT RSRAEELKPG PATRLVFDLD 150
PGEGVTMAQL AEVARAVRDL IDGIGLQTFP LTSGSKGLHL YTPLTEPVSS 200
KGATVLAKRV AQQLEKTMPK LVTSTMTKSL RAGKIFVDWS QNNGSKTTIA 250
PYSLRGRDHP TVAAPRTWDE LDDPALRHLR YDEVLTRVAR DGDLLAELDA 300
SDNQTPVPDR LTKYRSMRDA SKTPEPVPAA KPAAGRGNTF VIQEHHARRL 350
HYDFRLERDG VLVSWAVPKN LPDTPAVNHL AVHTEDHPLE YGGFEGVIPK 400
GEYGAGRVVI WDSGTYDAEK FQDDEVIVNL HGRKISGRYA LIQTEGDQWL 450
AHRMKDQNVF DFDTIAPMLA THGSVSALKA SQWAFEGKWD GYRLLVEADH 500
GTLRVRSRRG REVTGEYREL RSLAKALEEH HAVLDGEAVV LDKRGVPNFH 550
EMQNRGKSAR VEFWAFDLLY LDGRSLLRAR YRDRRKLLEM LASGGDLTVP 600
ELLPGDGDQA LRQSAERGWE GVIAKRRDST YQPGRRSSSW IKDKHWNTQE 650
VVIGGWKAGE GGRSSGIGSL LMGIPGPGGL HFAGRVGTGF TERDLANLKK 700
TLAPLRTDQS PFDAPLPRSE AKGVTFVEPV LVGEVRYSEW TPDDRLRQSS 750
WRGLRPDKEA SEVVRE 766
Length:766
Mass (Da):85,324
Last modified:January 9, 2007 - v1
Checksum:iDE06CD2799380FB0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000479 Genomic DNA. Translation: ABK69452.1.
RefSeqiYP_880311.1. NC_008595.1.

Genome annotation databases

EnsemblBacteriaiABK69452; ABK69452; MAV_1056.
GeneIDi4527070.
KEGGimav:MAV_1056.
PATRICi17983847. VBIMycAvi38287_1029.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000479 Genomic DNA. Translation: ABK69452.1 .
RefSeqi YP_880311.1. NC_008595.1.

3D structure databases

ProteinModelPortali A0QBM3.
SMRi A0QBM3. Positions 16-300, 460-766.
ModBasei Search...

Protein-protein interaction databases

STRINGi 243243.MAV_1056.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK69452 ; ABK69452 ; MAV_1056 .
GeneIDi 4527070.
KEGGi mav:MAV_1056.
PATRICi 17983847. VBIMycAvi38287_1029.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci MAVI243243:GH3Y-1056-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 104Imported.

Entry informationi

Entry nameiA0QBM3_MYCA1
AccessioniPrimary (citable) accession number: A0QBM3
Entry historyi
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: May 14, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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