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A0QBM3

- A0QBM3_MYCA1

UniProt

A0QBM3 - A0QBM3_MYCA1

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Protein
Submitted name:

DNA ligase

Gene

MAV_1056

Organism
Mycobacterium avium (strain 104)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMAVI243243:GH3Y-1056-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:MAV_1056Imported
OrganismiMycobacterium avium (strain 104)Imported
Taxonomic identifieri243243 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000001574: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi243243.MAV_1056.

Structurei

3D structure databases

ProteinModelPortaliA0QBM3.
SMRiA0QBM3. Positions 16-300, 460-766.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0QBM3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNAPRAWPAE PTATPRVKLT NADKVLYPAT GTTKADVFDY YTRIADVMIP
60 70 80 90 100
HIAGRPVTRK RWPNGVDQES FFEKQLASSA PDWLPRASVT HRSGTTTYPI
110 120 130 140 150
IDSATGLAWI AQQAALEVHV PQWRFVAEWT RSRAEELKPG PATRLVFDLD
160 170 180 190 200
PGEGVTMAQL AEVARAVRDL IDGIGLQTFP LTSGSKGLHL YTPLTEPVSS
210 220 230 240 250
KGATVLAKRV AQQLEKTMPK LVTSTMTKSL RAGKIFVDWS QNNGSKTTIA
260 270 280 290 300
PYSLRGRDHP TVAAPRTWDE LDDPALRHLR YDEVLTRVAR DGDLLAELDA
310 320 330 340 350
SDNQTPVPDR LTKYRSMRDA SKTPEPVPAA KPAAGRGNTF VIQEHHARRL
360 370 380 390 400
HYDFRLERDG VLVSWAVPKN LPDTPAVNHL AVHTEDHPLE YGGFEGVIPK
410 420 430 440 450
GEYGAGRVVI WDSGTYDAEK FQDDEVIVNL HGRKISGRYA LIQTEGDQWL
460 470 480 490 500
AHRMKDQNVF DFDTIAPMLA THGSVSALKA SQWAFEGKWD GYRLLVEADH
510 520 530 540 550
GTLRVRSRRG REVTGEYREL RSLAKALEEH HAVLDGEAVV LDKRGVPNFH
560 570 580 590 600
EMQNRGKSAR VEFWAFDLLY LDGRSLLRAR YRDRRKLLEM LASGGDLTVP
610 620 630 640 650
ELLPGDGDQA LRQSAERGWE GVIAKRRDST YQPGRRSSSW IKDKHWNTQE
660 670 680 690 700
VVIGGWKAGE GGRSSGIGSL LMGIPGPGGL HFAGRVGTGF TERDLANLKK
710 720 730 740 750
TLAPLRTDQS PFDAPLPRSE AKGVTFVEPV LVGEVRYSEW TPDDRLRQSS
760
WRGLRPDKEA SEVVRE
Length:766
Mass (Da):85,324
Last modified:January 9, 2007 - v1
Checksum:iDE06CD2799380FB0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000479 Genomic DNA. Translation: ABK69452.1.
RefSeqiYP_880311.1. NC_008595.1.

Genome annotation databases

EnsemblBacteriaiABK69452; ABK69452; MAV_1056.
GeneIDi4527070.
KEGGimav:MAV_1056.
PATRICi17983847. VBIMycAvi38287_1029.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000479 Genomic DNA. Translation: ABK69452.1 .
RefSeqi YP_880311.1. NC_008595.1.

3D structure databases

ProteinModelPortali A0QBM3.
SMRi A0QBM3. Positions 16-300, 460-766.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 243243.MAV_1056.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK69452 ; ABK69452 ; MAV_1056 .
GeneIDi 4527070.
KEGGi mav:MAV_1056.
PATRICi 17983847. VBIMycAvi38287_1029.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci MAVI243243:GH3Y-1056-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 104Imported.

Entry informationi

Entry nameiA0QBM3_MYCA1
AccessioniPrimary (citable) accession number: A0QBM3
Entry historyi
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: October 1, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3