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A0QBM3

- A0QBM3_MYCA1

UniProt

A0QBM3 - A0QBM3_MYCA1

Protein
Submitted name:

DNA ligase

Gene

MAV_1056

Organism
Mycobacterium avium (strain 104)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 51 (01 Oct 2014)
      Sequence version 1 (09 Jan 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMAVI243243:GH3Y-1056-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:MAV_1056Imported
    OrganismiMycobacterium avium (strain 104)Imported
    Taxonomic identifieri243243 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
    ProteomesiUP000001574: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi243243.MAV_1056.

    Structurei

    3D structure databases

    ProteinModelPortaliA0QBM3.
    SMRiA0QBM3. Positions 16-300, 460-766.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A0QBM3-1 [UniParc]FASTAAdd to Basket

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    MNAPRAWPAE PTATPRVKLT NADKVLYPAT GTTKADVFDY YTRIADVMIP    50
    HIAGRPVTRK RWPNGVDQES FFEKQLASSA PDWLPRASVT HRSGTTTYPI 100
    IDSATGLAWI AQQAALEVHV PQWRFVAEWT RSRAEELKPG PATRLVFDLD 150
    PGEGVTMAQL AEVARAVRDL IDGIGLQTFP LTSGSKGLHL YTPLTEPVSS 200
    KGATVLAKRV AQQLEKTMPK LVTSTMTKSL RAGKIFVDWS QNNGSKTTIA 250
    PYSLRGRDHP TVAAPRTWDE LDDPALRHLR YDEVLTRVAR DGDLLAELDA 300
    SDNQTPVPDR LTKYRSMRDA SKTPEPVPAA KPAAGRGNTF VIQEHHARRL 350
    HYDFRLERDG VLVSWAVPKN LPDTPAVNHL AVHTEDHPLE YGGFEGVIPK 400
    GEYGAGRVVI WDSGTYDAEK FQDDEVIVNL HGRKISGRYA LIQTEGDQWL 450
    AHRMKDQNVF DFDTIAPMLA THGSVSALKA SQWAFEGKWD GYRLLVEADH 500
    GTLRVRSRRG REVTGEYREL RSLAKALEEH HAVLDGEAVV LDKRGVPNFH 550
    EMQNRGKSAR VEFWAFDLLY LDGRSLLRAR YRDRRKLLEM LASGGDLTVP 600
    ELLPGDGDQA LRQSAERGWE GVIAKRRDST YQPGRRSSSW IKDKHWNTQE 650
    VVIGGWKAGE GGRSSGIGSL LMGIPGPGGL HFAGRVGTGF TERDLANLKK 700
    TLAPLRTDQS PFDAPLPRSE AKGVTFVEPV LVGEVRYSEW TPDDRLRQSS 750
    WRGLRPDKEA SEVVRE 766
    Length:766
    Mass (Da):85,324
    Last modified:January 9, 2007 - v1
    Checksum:iDE06CD2799380FB0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000479 Genomic DNA. Translation: ABK69452.1.
    RefSeqiYP_880311.1. NC_008595.1.

    Genome annotation databases

    EnsemblBacteriaiABK69452; ABK69452; MAV_1056.
    GeneIDi4527070.
    KEGGimav:MAV_1056.
    PATRICi17983847. VBIMycAvi38287_1029.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000479 Genomic DNA. Translation: ABK69452.1 .
    RefSeqi YP_880311.1. NC_008595.1.

    3D structure databases

    ProteinModelPortali A0QBM3.
    SMRi A0QBM3. Positions 16-300, 460-766.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 243243.MAV_1056.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABK69452 ; ABK69452 ; MAV_1056 .
    GeneIDi 4527070.
    KEGGi mav:MAV_1056.
    PATRICi 17983847. VBIMycAvi38287_1029.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci MAVI243243:GH3Y-1056-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
      Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 104Imported.

    Entry informationi

    Entry nameiA0QBM3_MYCA1
    AccessioniPrimary (citable) accession number: A0QBM3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 9, 2007
    Last sequence update: January 9, 2007
    Last modified: October 1, 2014
    This is version 51 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3