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Protein
Submitted name:

DNA polymerase LigD, polymerase domain

Gene

ligD

Organism
Mycobacterium avium (strain 104)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciMAVI243243:GH3Y-362-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domainImported
Gene namesi
Name:ligDImported
Ordered Locus Names:MAV_0362Imported
OrganismiMycobacterium avium (strain 104)Imported
Taxonomic identifieri243243 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000001574 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi243243.MAV_0362.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
OMAiFHPWPVR.
OrthoDBiEOG6FV833.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

A0Q9R1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAEEVDVD GIAVRLTNPD KVYFPKLGSK GTKRHLIDYY RAVAGGPMLD
60 70 80 90 100
ALRDRPTHLQ RFPDGIDGEE IYQKRIPQHH PDYLQTCRVT FPSGRTADAL
110 120 130 140 150
KVTHPAAIVW AAQMGTVTLH PWQVRCPETD HPDELRIDLD PQPGVAFAQA
160 170 180 190 200
RSVAVDVLRP LLDELGLVGY PKTSGGRGIH VFLRIATDWD FVEVRRAGIA
210 220 230 240 250
LAREVERRAP DAVTTSWWKE ERGARIFIDF NQNARDRTMA SAYSVRRTPI
260 270 280 290 300
ATVSMPLTWD QLAGADPDDY TMATVPDLVS ARENPWAAID DVAQSIGPLL
310 320 330 340
RMAEADEERG LGDMPYPPNY PKMPGEPKRV QPSRDTEHKK KN
Length:342
Mass (Da):38,244
Last modified:January 8, 2007 - v1
Checksum:i7EE5757BAB849216
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000479 Genomic DNA. Translation: ABK68595.1.
RefSeqiYP_879649.1. NC_008595.1.

Genome annotation databases

EnsemblBacteriaiABK68595; ABK68595; MAV_0362.
KEGGimav:MAV_0362.
PATRICi17982468. VBIMycAvi38287_0351.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000479 Genomic DNA. Translation: ABK68595.1.
RefSeqiYP_879649.1. NC_008595.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243243.MAV_0362.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK68595; ABK68595; MAV_0362.
KEGGimav:MAV_0362.
PATRICi17982468. VBIMycAvi38287_0351.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
OMAiFHPWPVR.
OrthoDBiEOG6FV833.

Enzyme and pathway databases

BioCyciMAVI243243:GH3Y-362-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C., Fraser C.M.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 104Imported.

Entry informationi

Entry nameiA0Q9R1_MYCA1
AccessioniPrimary (citable) accession number: A0Q9R1
Entry historyi
Integrated into UniProtKB/TrEMBL: January 8, 2007
Last sequence update: January 8, 2007
Last modified: March 31, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.