Skip Header

Contribute Send feedback
Read comments (?) or add your own

A0PVP8 (A0PVP8_MYCUA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase EMBL ABL06417.1
Gene names
Ordered Locus Names:MUL_4434 EMBL ABL06417.1
OrganismMycobacterium ulcerans (strain Agy99) [Complete proteome] [HAMAP] EMBL ABL06417.1
Taxonomic identifier362242 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium ›

Protein attributes

Sequence length770 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABL06417.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A0PVP8 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 862DFB49A646BA06

FASTA77084,666
        10         20         30         40         50         60 
MGSAQAWPPG QANGPQVTLT NADKVLYPAT GTTKSDVFGY YTGIAEVMIP HIAGRPATRK 

        70         80         90        100        110        120 
RWPNGVDQAS FFEKQLASSA PDWLPRASVV HRSGTTTYPI IDSATGLAWI AQQAALEVHV 

       130        140        150        160        170        180 
PQWRFVAEWT SKGEILTPGP ATRLVFDLDP GEGVTMAQLA QVARAVRDLL ADIGLSTLPL 

       190        200        210        220        230        240 
TSGSKGLHFY TPLDEPVSSK GATVLAKRVA QQLETVMPAL VTATMTKSLR AGKVFLDWSQ 

       250        260        270        280        290        300 
NSGSKTTIAP YSLRGREQPT VAAPRSWEEL DDPGLRQLTY DEVLARLTRD GDLIAALDAD 

       310        320        330        340        350        360 
LPGDDRLLKY RSMRNASKTP EPVPRARPVV GQGNTFVIQE HHARRLHDDF RLERDGVLVS 

       370        380        390        400        410        420 
WAVPKNLPET TSVNHLAVHT EDHPLEYATF EGNIPKGEYG AGKVIIWDSG TYDTEKFRDD 

       430        440        450        460        470        480 
SRNGAEKGEV IVNLHGSRIS GRYALIQTNG DQWLAHRMKD QTAFDFDTLA PMLTSHGSVA 

       490        500        510        520        530        540 
GLESGQWAFE GKWDGYRLLV EADHGALRLR SRSGRDVTTE YPQLRSLAAD LADHHVVLDG 

       550        560        570        580        590        600 
ELVALDSSGV PSFNEMQNRV RATRIEFWAF DLLFLDGRSL LRARYRDRRK LLETLGSAGN 

       610        620        630        640        650        660 
LIVPELLPGD GAEALAYSHK RGWEGVIAKR RDSGYQPGRR SSAWIKDKHW NTQEVVIGGW 

       670        680        690        700        710        720 
RVGEGGRSSG IGSLLMGIPG PSGLHFAGRV GTGFTERDLA NLKKTLAPLH TDESPFDAAL 

       730        740        750        760        770 
PAREAKGVTF VVPTLVGEVR YSEWTPDDRL RQSSWRGLRP DKNPSEVVRE

« Hide

References

[1]"Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer."
Stinear T.P., Seemann T., Pidot S.J.A., Frigui W., Reysset G., Garnier T., Meurice G., Simon D., Bouchier C., Ma L., Tichit M., Porter J.L., Ryan J.E., Johnson P.D.R., Davies J.K., Jenkin G.A., Small P.L.C., Jones L.M. expand/collapse author list , Tekaia F., Laval F., Daffe M., Parkhill J., Cole S.T.
Genome Res. 17:192-200(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Agy99 EMBL ABL06417.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000325 Genomic DNA. Translation: ABL06417.1.
RefSeqYP_907888.1. NC_008611.1.

3D structure databases

ProteinModelPortalA0PVP8.
SMRA0PVP8. Positions 16-302, 464-770.
ModBaseSearch...

Protein-protein interaction databases

STRING362242.MUL_4434.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABL06417; ABL06417; MUL_4434.
GeneID4550222.
KEGGmul:MUL_4434.
PATRIC18176673. VBIMycUlc37413_5139.

Organism-specific databases

GenoListMUL_4434.
CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMASGSKGIH.
ProtClustDBPRK09632.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA0PVP8_MYCUA
AccessionPrimary (citable) accession number: A0PVP8
Entry history
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info