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A0PVH5 (A0PVH5_MYCUA) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:ligC EMBL ABL06344.1
Ordered Locus Names:MUL_4340 EMBL ABL06344.1
OrganismMycobacterium ulcerans (strain Agy99) [Complete proteome] [HAMAP] EMBL ABL06344.1
Taxonomic identifier362242 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length358 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABL06344.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A0PVH5 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: 46F12B555106E2EC

FASTA35840,376
        10         20         30         40         50         60 
MDLPVMPPIS PMLAKAVKTI PADASYEPKW DGFRSICFRD NDEVELGSRN ERPLTRYFPE 

        70         80         90        100        110        120 
LVAAVRAELP RRCVLDGEIV IATGHGLDFE ALQQRIHHAD SRVRMLAEHI PASFIAFDLL 

       130        140        150        160        170        180 
ALGDDDYTTR PFVERRAALV EAVGSGPSIH VTPATTDQAT ARRWFEEFEG AGLDGVIAKP 

       190        200        210        220        230        240 
LAVTYQPDKC VMFKLKHERT ADCVLAGYRL HKSGGDVIGS LLLGLYQDDG QLASVGVIGA 

       250        260        270        280        290        300 
FPMAERRRLF TELQELVTSF DDHPWNWAAH QSGERTPRKN EFSRWNAGKD LSFVPLRPER 

       310        320        330        340        350 
VVEVRYDHME GPRFRHTAQF NRWRPDRDPR SCTYAQLEQP LMFNLDDIVA GLGPRCGH 

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References

[1]"Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer."
Stinear T.P., Seemann T., Pidot S., Frigui W., Reysset G., Garnier T., Meurice G., Simon D., Bouchier C., Ma L., Tichit M., Porter J.L., Ryan J., Johnson P.D., Davies J.K., Jenkin G.A., Small P.L., Jones L.M. expand/collapse author list , Tekaia F., Laval F., Daffe M., Parkhill J., Cole S.T.
Genome Res. 17:192-200(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Agy99 EMBL ABL06344.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000325 Genomic DNA. Translation: ABL06344.1.
RefSeqYP_907815.1. NC_008611.1.

3D structure databases

ProteinModelPortalA0PVH5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING362242.MUL_4340.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABL06344; ABL06344; MUL_4340.
GeneID4550500.
KEGGmul:MUL_4340.
PATRIC18176443. VBIMycUlc37413_5026.

Organism-specific databases

GenoListMUL_4340.
CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222508.
KOK01971.
OMAERTADCV.
OrthoDBEOG63NMFT.
ProtClustDBPRK08224.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA0PVH5_MYCUA
AccessionPrimary (citable) accession number: A0PVH5
Entry history
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: April 16, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)