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A0PJN2

- A0PJN2_MOUSE

UniProt

A0PJN2 - A0PJN2_MOUSE

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Protein
Submitted name:

Cln6 protein

Gene

Cln6

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. cellular macromolecule catabolic process Source: MGI
  2. cholesterol metabolic process Source: Ensembl
  3. ganglioside metabolic process Source: Ensembl
  4. glycosaminoglycan metabolic process Source: Ensembl
  5. locomotion involved in locomotory behavior Source: MGI
  6. lysosomal lumen acidification Source: Ensembl
  7. lysosome organization Source: MGI
  8. positive regulation of proteolysis Source: Ensembl
  9. visual perception Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Cln6 proteinImported
Gene namesi
Name:Cln6Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:2159324. Cln6.

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum lumen Source: Ensembl
  2. nucleus Source: Ensembl
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriA0PJN2.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034776.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG27962.
HOVERGENiHBG039396.

Family and domain databases

InterProiIPR029255. CLN6.
[Graphical view]
PfamiPF15156. CLN6. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

A0PJN2-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
SVKAEDKDRT APFHLDLWFY FTLQNWVLDF GRPIAMLVFP IQWFPLNKPS
60 70 80 90 100
VGDYFHMTYN IITPFLLLKL IERSPRTLPR SIVYVSIITF IMGASIHLVG
110 120 130 140 150
DSVNHRLLFS GYQHHLSVRE NPIIKNLKPE TLIDSFELLY YYDEYLGHCM
160 170 180 190 200
WYIPFFLILF MYFSGCFTTC KAESHMPGPA LLLVVPSGLY YWYLVTEGQI
210 220 230 240 250
FILFIFTFFA MLALVLHQKR RRLFLDSNGL FLLYSFALTL SLVALWVAWL
260 270 280
WNDPVLRKKY PGVIYVPEPW AFYTLHVSSQ Q
Length:281
Mass (Da):33,099
Last modified:January 9, 2007 - v1
Checksum:iC652580BFD53BC92
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC116794 mRNA. Translation: AAI16795.1.
BC116798 mRNA. Translation: AAI16799.1.
UniGeneiMm.283636.

Genome annotation databases

UCSCiuc012gut.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC116794 mRNA. Translation: AAI16795.1 .
BC116798 mRNA. Translation: AAI16799.1 .
UniGenei Mm.283636.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000034776.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi uc012gut.1. mouse.

Organism-specific databases

MGIi MGI:2159324. Cln6.

Phylogenomic databases

eggNOGi NOG27962.
HOVERGENi HBG039396.

Miscellaneous databases

ChiTaRSi CLN6. mouse.
NextBioi 35542300.
SOURCEi Search...

Gene expression databases

Genevestigatori A0PJN2.

Family and domain databases

InterProi IPR029255. CLN6.
[Graphical view ]
Pfami PF15156. CLN6. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.

Entry informationi

Entry nameiA0PJN2_MOUSE
AccessioniPrimary (citable) accession number: A0PJN2
Entry historyi
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)