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Protein
Submitted name:

Cln6 protein

Gene

Cln6

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. protein homodimerization activity Source: MGI

GO - Biological processi

  1. cellular macromolecule catabolic process Source: MGI
  2. cholesterol metabolic process Source: MGI
  3. ganglioside metabolic process Source: MGI
  4. glycosaminoglycan metabolic process Source: MGI
  5. locomotion involved in locomotory behavior Source: MGI
  6. lysosomal lumen acidification Source: MGI
  7. lysosome organization Source: MGI
  8. positive regulation of proteolysis Source: MGI
  9. visual perception Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Cln6 proteinImported
Gene namesi
Name:Cln6Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:2159324. Cln6.

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum Source: MGI
  2. endoplasmic reticulum lumen Source: MGI
  3. intracellular membrane-bounded organelle Source: MGI
  4. membrane Source: MGI
  5. nuclear membrane Source: MGI
  6. nucleoplasm Source: MGI
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiA0PJN2.

Expressioni

Gene expression databases

BgeeiA0PJN2.
ExpressionAtlasiA0PJN2. baseline and differential.
GenevestigatoriA0PJN2.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034776.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG27962.
HOVERGENiHBG039396.

Family and domain databases

InterProiIPR029255. CLN6.
[Graphical view]
PfamiPF15156. CLN6. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

A0PJN2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
SVKAEDKDRT APFHLDLWFY FTLQNWVLDF GRPIAMLVFP IQWFPLNKPS
60 70 80 90 100
VGDYFHMTYN IITPFLLLKL IERSPRTLPR SIVYVSIITF IMGASIHLVG
110 120 130 140 150
DSVNHRLLFS GYQHHLSVRE NPIIKNLKPE TLIDSFELLY YYDEYLGHCM
160 170 180 190 200
WYIPFFLILF MYFSGCFTTC KAESHMPGPA LLLVVPSGLY YWYLVTEGQI
210 220 230 240 250
FILFIFTFFA MLALVLHQKR RRLFLDSNGL FLLYSFALTL SLVALWVAWL
260 270 280
WNDPVLRKKY PGVIYVPEPW AFYTLHVSSQ Q
Length:281
Mass (Da):33,099
Last modified:January 9, 2007 - v1
Checksum:iC652580BFD53BC92
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC116794 mRNA. Translation: AAI16795.1.
BC116798 mRNA. Translation: AAI16799.1.
UniGeneiMm.283636.

Genome annotation databases

UCSCiuc012gut.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC116794 mRNA. Translation: AAI16795.1.
BC116798 mRNA. Translation: AAI16799.1.
UniGeneiMm.283636.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034776.

Proteomic databases

PaxDbiA0PJN2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiuc012gut.1. mouse.

Organism-specific databases

MGIiMGI:2159324. Cln6.

Phylogenomic databases

eggNOGiNOG27962.
HOVERGENiHBG039396.

Miscellaneous databases

ChiTaRSiCln6. mouse.
NextBioi35542300.
SOURCEiSearch...

Gene expression databases

BgeeiA0PJN2.
ExpressionAtlasiA0PJN2. baseline and differential.
GenevestigatoriA0PJN2.

Family and domain databases

InterProiIPR029255. CLN6.
[Graphical view]
PfamiPF15156. CLN6. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.

Entry informationi

Entry nameiA0PJN2_MOUSE
AccessioniPrimary (citable) accession number: A0PJN2
Entry historyi
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: April 1, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.