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A0PJN2

- A0PJN2_MOUSE

UniProt

A0PJN2 - A0PJN2_MOUSE

Protein
Submitted name:

Cln6 protein

Gene

Cln6

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (09 Jan 2007)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. cellular macromolecule catabolic process Source: MGI
    2. cholesterol metabolic process Source: Ensembl
    3. ganglioside metabolic process Source: Ensembl
    4. glycosaminoglycan metabolic process Source: Ensembl
    5. locomotion involved in locomotory behavior Source: MGI
    6. lysosomal lumen acidification Source: Ensembl
    7. lysosome organization Source: MGI
    8. positive regulation of proteolysis Source: Ensembl
    9. visual perception Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Cln6 proteinImported
    Gene namesi
    Name:Cln6Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:2159324. Cln6.

    Subcellular locationi

    GO - Cellular componenti

    1. endoplasmic reticulum lumen Source: Ensembl

    Expressioni

    Gene expression databases

    GenevestigatoriA0PJN2.

    Interactioni

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000034776.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG27962.
    HOVERGENiHBG039396.
    InParanoidiA0PJN2.

    Family and domain databases

    InterProiIPR029255. CLN6.
    [Graphical view]
    PfamiPF15156. CLN6. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    A0PJN2-1 [UniParc]FASTAAdd to Basket

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    SVKAEDKDRT APFHLDLWFY FTLQNWVLDF GRPIAMLVFP IQWFPLNKPS    50
    VGDYFHMTYN IITPFLLLKL IERSPRTLPR SIVYVSIITF IMGASIHLVG 100
    DSVNHRLLFS GYQHHLSVRE NPIIKNLKPE TLIDSFELLY YYDEYLGHCM 150
    WYIPFFLILF MYFSGCFTTC KAESHMPGPA LLLVVPSGLY YWYLVTEGQI 200
    FILFIFTFFA MLALVLHQKR RRLFLDSNGL FLLYSFALTL SLVALWVAWL 250
    WNDPVLRKKY PGVIYVPEPW AFYTLHVSSQ Q 281
    Length:281
    Mass (Da):33,099
    Last modified:January 9, 2007 - v1
    Checksum:iC652580BFD53BC92
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC116794 mRNA. Translation: AAI16795.1.
    BC116798 mRNA. Translation: AAI16799.1.
    UniGeneiMm.283636.

    Genome annotation databases

    UCSCiuc012gut.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC116794 mRNA. Translation: AAI16795.1 .
    BC116798 mRNA. Translation: AAI16799.1 .
    UniGenei Mm.283636.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000034776.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi uc012gut.1. mouse.

    Organism-specific databases

    MGIi MGI:2159324. Cln6.

    Phylogenomic databases

    eggNOGi NOG27962.
    HOVERGENi HBG039396.
    InParanoidi A0PJN2.

    Miscellaneous databases

    ChiTaRSi CLN6. mouse.
    NextBioi 35542300.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori A0PJN2.

    Family and domain databases

    InterProi IPR029255. CLN6.
    [Graphical view ]
    Pfami PF15156. CLN6. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: BrainImported.

    Entry informationi

    Entry nameiA0PJN2_MOUSE
    AccessioniPrimary (citable) accession number: A0PJN2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 9, 2007
    Last sequence update: January 9, 2007
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)