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A0PGH6 (A0PGH6_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length2465 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 6 ANK repeats. RuleBase RU003321

Sequences

Sequence LengthMass (Da)Tools
A0PGH6 [UniParc].

Last modified January 9, 2007. Version 1.
Checksum: A58F9D8A2D519F7F

FASTA2,465267,589
        10         20         30         40         50         60 
MHLFFVKLIV VISLNTLTQG LECSEKCQNG GTCEPTADGR GECKCLDLYA GPACQFRNPC 

        70         80         90        100        110        120 
FQSPCRNGGV CRLITSANKV DFVCNCSLGY TDRLCLTPTN NVCLGAPCRN GGTCELTSIH 

       130        140        150        160        170        180 
NYRCKCPPGW SGKTCQQADP CASNPCANGG QCSPFDSDFL CHCTPYFSGQ TCKQDVNECA 

       190        200        210        220        230        240 
QIPSPCKNGG VCENGVGTYH CNCPAEYTGK HCESLYQPCN PSPCLHGGTC VQKGETSYEC 

       250        260        270        280        290        300 
SCLPGRQEFV LIMRKCLNDY FLMLVFIGFS GQNCEENIDD CPDHRCLNGG TCVDGVNTYN 

       310        320        330        340        350        360 
CQCKPEWTGQ FCTEDVNECD LMPNSCQNGG TCLNTQGGYN CVCVNGWTGD DCSENIDDCA 

       370        380        390        400        410        420 
DAACHTGATC HDRVASFLCE CPHGRTGLLC HLDDACISNP CQKGSNCDTN PVNGKAICTC 

       430        440        450        460        470        480 
PLGYVGPACD QDVDECSLGA NPCEHAGKCI NTKGSFQCKC LQGYVGARCE LDINECLSTP 

       490        500        510        520        530        540 
CQNDATCLDQ IGGFHCICMP GYEGVFCQIN TDECASMPCL NNGKCIDKIN NYQCECPTGF 

       550        560        570        580        590        600 
SGSQCQFDID ECASTPCKNG AKCMDGPNMY TCQCTEGYTG QHCETDVDEC LSNPCHYGTC 

       610        620        630        640        650        660 
KDGLASFTCV CRAGFMGRLC EININECLSQ PCQNGGTCQD RENAYLCVCP KGTAGANCEI 

       670        680        690        700        710        720 
NLDDCQSNPC DFGRCIDKIN GYECACEPGY TGKMCNVNID ECAINPCHNG GTCVDGVNGF 

       730        740        750        760        770        780 
TCLCREGYHD TTCQSQLNEC LSNPCIHGHC EDKVNGYNCI CDSGWSGVNC DINNNECESN 

       790        800        810        820        830        840 
PCMNGGTCKD MTSGYVCTCR AGFSGPNCQT NINECASNPC LNQGTCIDDV AGYKCNCLLP 

       850        860        870        880        890        900 
YTGQTCEVDI NECVKNPCRN DAICQNSIGS YKCSCKAGYT GRNCETDIDD CKPNPCSNGG 

       910        920        930        940        950        960 
FCKDAVNAFT CTCLPGFRGG RCEEDINECE SNPCKNGANC TDCVNSYTCT CPPGFSGIHC 

       970        980        990       1000       1010       1020 
ENNTPDCTES SCFNGGTCVD GINSFTCLCP KGFTGNYCQH DINECDSRPC MNGGTCQDSY 

      1030       1040       1050       1060       1070       1080 
GTYKCTCPQG YHGLNCQELV NWCKPSPCKN GGICRQSGTR YSCQCQTGWT GLYCDVPSVS 

      1090       1100       1110       1120       1130       1140 
CEVAAKQQGV DVVRLCRNSG QCLDAGNTHY CHCQAGYTGS YCEEQVDECI PNPCQNGATC 

      1150       1160       1170       1180       1190       1200 
TDYLGGYSCE CVPGYHGVNC SDEINECLSQ PCQNGGTCID LINTYKCSCP RGTQGVHCEI 

      1210       1220       1230       1240       1250       1260 
NIDDCTPFTD PITHEPKCFN QGRCVDRVGG YHCICPPGYV GERCEGDVNE CLSNPCGTHS 

      1270       1280       1290       1300       1310       1320 
CIQLKNNYRC ECRTGYTGQH CDKVFDGCKG KPCRNGGTCA VASNTPHGFI CKCPPGFTGS 

      1330       1340       1350       1360       1370       1380 
TCEYDAHACG SLQCKNGGTC VSGHKSPKCL CTPAFTGPEC QDPSGGHCTT NPCYNGGTCE 

      1390       1400       1410       1420       1430       1440 
YITEEPYYHC ICPTNFNGLF CHILDWSFPG GTGQDITPAP KVSVSCEIEQ CKVKKGNKIC 

      1450       1460       1470       1480       1490       1500 
DSACNNYACD WDGGDCSLNF NDPWKNCSAA LQCWRYFNNG KCDEQCHNTG CLYDGFDCQR 

      1510       1520       1530       1540       1550       1560 
VEAQCNPLYD QYCKDHFADG YCDQGCNNAE CEWDGLDCAN DTPEKLAAGL LVVVVHIHPD 

      1570       1580       1590       1600       1610       1620 
QLRNNSFGFL RELSRVLHTN VVFRRDSKGQ EMIYPYYGNE QELKKHNIKR SLDGWNDASS 

      1630       1640       1650       1660       1670       1680 
DVLSSMKNSI YNIVVEGGRK RRELEKIQVK GSVVYLEIDN RQCYQQTSEC FQSANDAAAF 

      1690       1700       1710       1720       1730       1740 
LGALASSGSL KMPYVIEAVT SEIDGPSPVE LYPVYVVLAG LALLAFVAIG MVASRKRRRE 

      1750       1760       1770       1780       1790       1800 
HGQLWFPEGF KTSEPSKKKR REPVGEDSVG LRPLKNCSDI SLMDDNQNEW GEEEQSDSKR 

      1810       1820       1830       1840       1850       1860 
FRSEEQAMLD LDDQPDHRQW TQQHLDAADL RIPSIAPTPP QGEIENDCMD VNARGPDGFT 

      1870       1880       1890       1900       1910       1920 
PLMIASCSGG GLETGNSEEE EDASANVIND FIYQGANLHN QTDRTGETAL HLAARYARSD 

      1930       1940       1950       1960       1970       1980 
AAKRLLEASA DANIQDNMGR TPLHAAVAAD AQGVFQILIR NRATDLDARM HDGTTPLILA 

      1990       2000       2010       2020       2030       2040 
ARLAVEGMVE ELINCHADVN AIDDFGKSAL HWAAAVNNVD AAMVLLKNGA NKDMQNNKEE 

      2050       2060       2070       2080       2090       2100 
TPLFLAAREG SYETAKVLLE HFANREITDH MDRLPRDIAQ DRMHHDIVRL IDEYNLVRSP 

      2110       2120       2130       2140       2150       2160 
PMHSAPLCTT LSPPLCSPNG FMGNMKPSVQ SKKPRKPSTK GIGCKDGKDM KVKKKKAQDG 

      2170       2180       2190       2200       2210       2220 
KGNLLDSSAV LSPVDSLESP HGYISDIASP PQMTSPFQQS PSMSLNQLQG MSDNHMGVSH 

      2230       2240       2250       2260       2270       2280 
LGIGNNQDLS HIQFDPLPPR LTHLPVAGSN GSNVMNGQCE WLERMHGSMA PQNQFTAMRN 

      2290       2300       2310       2320       2330       2340 
ASGQANLHQS GLMTSHHNGR PATLSQMMNY QSMQNTHLMQ QMQQSMQPRP QQTGVQLQSQ 

      2350       2360       2370       2380       2390       2400 
SQNFIGGDLG GPELQQSAGN SMSIHTIIPQ ETQLLNPSSL GSSMAGTQFL TPPSQHSYTP 

      2410       2420       2430       2440       2450       2460 
ALDANTPNHQ LQVPDHHPFL TPSPGSPDQW SSSSPNSNMS DWSEGISSPP TSMQSQIGHM 


PEQFK 

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References

[1]"Sequence and function of zebrafish notch1b gene."
Qiu X., Jiang Y.J.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY805407 mRNA. Translation: AAX19695.1.
RefSeqNP_571377.2. NM_131302.2.
UniGeneDr.75825.

3D structure databases

ProteinModelPortalA0PGH6.
SMRA0PGH6. Positions 431-546, 1860-2100.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID794892.
KEGGdre:794892.

Organism-specific databases

CTD794892.
ZFINZDB-GENE-990415-183. notch1b.

Phylogenomic databases

eggNOGCOG0666.
HOGENOMHOG000234369.
HOVERGENHBG052650.
InParanoidA0PGH6.
KOK02599.
PhylomeDBA0PGH6.

Family and domain databases

Gene3D1.25.40.20. 1 hit.
InterProIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR024600. DUF3454_notch.
IPR000742. EG-like_dom.
IPR001881. EGF-like_Ca-bd_dom.
IPR013032. EGF-like_CS.
IPR000152. EGF-type_Asp/Asn_hydroxyl_site.
IPR018097. EGF_Ca-bd_CS.
IPR009030. Growth_fac_rcpt_N_dom.
IPR008297. Notch.
IPR022362. Notch_1.
IPR000800. Notch_dom.
IPR010660. Notch_NOD_dom.
IPR011656. Notch_NODP_dom.
[Graphical view]
PfamPF12796. Ank_2. 2 hits.
PF11936. DUF3454. 1 hit.
PF00008. EGF. 20 hits.
PF07645. EGF_CA. 5 hits.
PF12661. hEGF. 1 hit.
PF06816. NOD. 1 hit.
PF07684. NODP. 1 hit.
PF00066. Notch. 3 hits.
[Graphical view]
PIRSFPIRSF002279. Notch. 1 hit.
PRINTSPR01452. LNOTCHREPEAT.
PR01984. NOTCH1.
SMARTSM00248. ANK. 6 hits.
SM00181. EGF. 11 hits.
SM00179. EGF_CA. 24 hits.
SM00004. NL. 3 hits.
[Graphical view]
SUPFAMSSF48403. SSF48403. 1 hit.
SSF57184. SSF57184. 5 hits.
SSF90193. SSF90193. 3 hits.
PROSITEPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 4 hits.
PS00010. ASX_HYDROXYL. 23 hits.
PS00022. EGF_1. 32 hits.
PS01186. EGF_2. 25 hits.
PS50026. EGF_3. 35 hits.
PS01187. EGF_CA. 22 hits.
PS50258. LNR. 3 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio20932028.

Entry information

Entry nameA0PGH6_DANRE
AccessionPrimary (citable) accession number: A0PGH6
Entry history
Integrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: July 9, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)