A0M4G1 (A0M4G1_GRAFK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-dehydro-3-deoxyphosphooctonate aldolase EMBL CAL67506.1
EC=2.5.1.55 EMBL CAL67506.1

Gene names

Name:	kdsA EMBL CAL67506.1
Ordered Locus Names:	GFO_2550

Organism

Gramella forsetii (strain KT0803) [Complete proteome] [HAMAP]

Taxonomic identifier

411154 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Gramella

Protein attributes

Sequence length	288 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. SAAS SAAS006269
Pathway	Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. SAAS SAAS006269 Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. SAAS SAAS006269
Subcellular location	Cytoplasm By similarity SAAS SAAS006269.

Ontologies

Keywords
Biological process	Lipopolysaccharide biosynthesis SAAS SAAS006269
Cellular component	Cytoplasm SAAS SAAS006269
Molecular function	Transferase SAAS SAAS006269 EMBL CAL67506.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lipopolysaccharide biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	3-deoxy-8-phosphooctulonate synthase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0M4G1 [UniParc]. Last modified December 12, 2006. Version 1. Checksum: D3B9A019718602A3	FASTA	288	31,719
	10 20 30 40 50 60 MQCAINSVTF ASNFEEMDLS KIPNIKFSDS NNFFLLSGPC AIEGEDMALR IAEKVVSITD 70 80 90 100 110 120 KLEIPYVFKG SFKKANRSRI DSFTGIGDEK ALKILRKVSE TFNIPTVTDI HEVNDAKLAA 130 140 150 160 170 180 EYVDILQIPA FLVRQTDLVV AAAETGKVVN LKKGQFMSPE AMKHAVTKVT DCNNEQVMVT 190 200 210 220 230 240 DRGTMFGYQD MIVDFRGIPT MREFAPTVLD VTHSLQQPNQ SSGVTGGRPD MIETIARAGV 250 260 270 280 VNKVDGLFIE THFDPANAKS DGANMLDLSY LEKLLSNLVA IRKTVNSL

References

[1]

"Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter." Bauer M., Kube M., Teeling H., Richter M., Lombardot T., Allers E., Wuerdemann C.A., Quast C., Kuhl H., Knaust F., Woebken D., Bischof K., Mussmann M., Choudhuri J.V., Meyer F., Reinhardt R., Amann R.I., Gloeckner F.O. Environ. Microbiol. 8:2201-2213(2006) [PubMed: 17107561] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU207366 Genomic DNA. Translation: CAL67506.1.
RefSeq	YP_862573.1. NC_008571.1.
3D structure databases
ProteinModelPortal	A0M4G1.
ModBase	Search...
Protein-protein interaction databases
STRING	A0M4G1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4650777.
GenomeReviews	Gene locus GFO_2550 in contig CU207366_GR.
KEGG	gfo:GFO_2550.
NMPDR	fig|411154.5.peg.2413.
PATRIC	22073863. VBIGraFor5527_2460.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2877.
HOGENOM	HBG575990.
OMA	HEPHQAA.
PhylomeDB	A0M4G1.
ProtClustDB	PRK05198.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR006218. DAHP1/KDSA. IPR006269. KDO8P_synthase. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01627.
PANTHER	PTHR21057:SF2. KDO8P_synthase. 1 hit.
Pfam	PF00793. DAHP_synth_1. 1 hit. [Graphical view]
TIGRFAMs	TIGR01362. KDO8P_synth. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A0M4G1_GRAFK

Accession

Primary (citable) accession number: A0M4G1

Entry history

Integrated into UniProtKB/TrEMBL:	December 12, 2006
Last sequence update:	December 12, 2006
Last modified:	December 14, 2011
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)