A0M0D9 (RL9_GRAFK) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L9

Gene names

Name:	rplI
Ordered Locus Names:	GFO_1110

Organism

Gramella forsetii (strain KT0803) [Complete proteome] [HAMAP]

Taxonomic identifier

411154 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Gramella

Protein attributes

Sequence length	149 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds to the 23S rRNA By similarity. HAMAP MF_00503
Sequence similarities	Belongs to the ribosomal protein L9P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 149	149	50S ribosomal protein L9 HAMAP MF_00503		PRO_1000014785

Sequences

	Sequence		Length	Mass (Da)
	A0M0D9 [UniParc]. Last modified December 12, 2006. Version 1. Checksum: 1F85E980C7251414	FASTA	149	16,438
	10 20 30 40 50 60 MEVILKKDVD NLGFKDDLVA VKNGYGRNYL IPHGFAELAT PSARKVLSET LKQRAYKEQK 70 80 90 100 110 120 HIDEAKKQAE KLNNLEIKIT AKAGAGDKLF GSITNGDLAD ALAKEGVEIE KKYISIAGGN 130 140 IKRLGQYDAT LRFHREVISN FSFDVVGDA

References

[1]

"Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter." Bauer M., Kube M., Teeling H., Richter M., Lombardot T., Allers E., Wuerdemann C.A., Quast C., Kuhl H., Knaust F., Woebken D., Bischof K., Mussmann M., Choudhuri J.V., Meyer F., Reinhardt R., Amann R.I., Gloeckner F.O. Environ. Microbiol. 8:2201-2213(2006) [PubMed: 17107561] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: KT0803.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU207366 Genomic DNA. Translation: CAL66084.1.
RefSeq	YP_861151.1. NC_008571.1.
3D structure databases
ProteinModelPortal	A0M0D9.
ModBase	Search...
Protein-protein interaction databases
STRING	A0M0D9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4652937.
GenomeReviews	Gene locus GFO_1110 in contig CU207366_GR.
KEGG	gfo:GFO_1110.
NMPDR	fig|411154.5.peg.1052.
PATRIC	22071047. VBIGraFor5527_1070.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0359.
HOGENOM	HBG586587.
OMA	ITVPDIH.
PhylomeDB	A0M0D9.
ProtClustDB	PRK00137.
Enzyme and pathway databases
BioCyc	GFOR411154:GFO_1110-MONOMER.
Family and domain databases
HAMAP	MF_00503. Ribosomal_L9. [Tree]
InterPro	IPR000244. Ribosomal_L9. IPR009027. Ribosomal_L9/RNase_H1_N. IPR020594. Ribosomal_L9_bac/chp. IPR020069. Ribosomal_L9_C. IPR020070. Ribosomal_L9_N. [Graphical view]
Gene3D	G3DSA:3.10.430.100. Ribosomal_L9. 1 hit. G3DSA:3.40.5.10. Ribosomal_L9. 1 hit.
KO	K02939.
PANTHER	PTHR21368. Ribosomal_L9. 1 hit.
Pfam	PF03948. Ribosomal_L9_C. 1 hit. PF01281. Ribosomal_L9_N. 1 hit. [Graphical view]
SUPFAM	SSF55658. L9_N_like. 1 hit. SSF55653. Ribosomal_L9. 1 hit.
TIGRFAMs	TIGR00158. L9. 1 hit.
PROSITE	PS00651. RIBOSOMAL_L9. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL9_GRAFK

Accession

Primary (citable) accession number: A0M0D9

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	December 12, 2006
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program