A0LZ79 (A0LZ79_GRAFK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase RuleBase RU003455
EC=2.7.1.16 RuleBase RU003455

Gene names

Name:	araB EMBL CAL65674.1
Ordered Locus Names:	GFO_0697

Organism

Gramella forsetii (strain KT0803) [Complete proteome] [HAMAP]

Taxonomic identifier

411154 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Gramella

Protein attributes

Sequence length	565 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. RuleBase RU003455 SAAS SAAS005929
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. RuleBase RU003455 SAAS SAAS005929
Sequence similarities	Belongs to the ribulokinase family. RuleBase RU003455

Ontologies

Keywords
Biological process	Arabinose catabolism RuleBase RU003455 SAAS SAAS005929 Carbohydrate metabolism
Ligand	ATP-binding SAAS SAAS005929 Nucleotide-binding
Molecular function	Kinase RuleBase RU003455 SAAS SAAS005929 EMBL CAL65674.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0LZ79 [UniParc]. Last modified December 12, 2006. Version 1. Checksum: 698224B6E83C30BB	FASTA	565	62,536
	10 20 30 40 50 60 MSNYVIGLDY GSDSVRAVLV NIDSGKEEAS STHLYKRWKE DKYCEPSINQ FRQHPLDHIE 70 80 90 100 110 120 GLEKTIKSVL QKTGVEGNSV KAICIDTTGS SPVPVNKDGK ALALTEGFEE NPNAMMVLWK 130 140 150 160 170 180 DHTSINEANE INHLARSWEG EDYTKYEGGI YSSEWFWAKI LHIAREDEKV KNAAWSWMEH 190 200 210 220 230 240 CDLMTYILIG GSDLESFKRS RCAAGHKAMW HESWGGLPSK DFLSQLDPYL AELKDRLYEK 250 260 270 280 290 300 TYTSDEVAGN LSKEWAGKLG LSTECIISVG TFDAHAGAVG AKIDEHSLVR VMGTSTCDIM 310 320 330 340 350 360 VARNEEIGKN TVKGICGQVD GSVIPGMIGL EAGQSAFGDV LAWFKDVLSW PLENLVYDSE 370 380 390 400 410 420 ILAEEQKKKL REEVEDNFIP KLTAQAEKLD LSESMPIALD WVNGRRTPDA NQELKSAITN 430 440 450 460 470 480 LSLGTKAPHI FNALVNSICF GSKMIVDRFE SEGVKINNVI GIGGVARKSA FIMQTLANTL 490 500 510 520 530 540 DMPIKVASSD EAPALGAAIY AAVAAGLYPN TIEASKKLGS PFEAEYHPQP EKVKELKKYM 550 560 AEYRELADFV ENKITQKNKQ NEFAV

References

[1]

"Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter." Bauer M., Kube M., Teeling H., Richter M., Lombardot T., Allers E., Wuerdemann C.A., Quast C., Kuhl H., Knaust F., Woebken D., Bischof K., Mussmann M., Choudhuri J.V., Meyer F., Reinhardt R., Amann R.I., Gloeckner F.O. Environ. Microbiol. 8:2201-2213(2006) [PubMed: 17107561] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU207366 Genomic DNA. Translation: CAL65674.1.
RefSeq	YP_860741.1. NC_008571.1.
3D structure databases
ProteinModelPortal	A0LZ79.
ModBase	Search...
Protein-protein interaction databases
STRING	A0LZ79.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4651900.
GenomeReviews	Gene locus GFO_0697 in contig CU207366_GR.
KEGG	gfo:GFO_0697.
NMPDR	fig|411154.5.peg.661.
PATRIC	22070241. VBIGraFor5527_0670.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1069.
HOGENOM	HBG312681.
OMA	NGRRTPD.
PhylomeDB	A0LZ79.
ProtClustDB	PRK04123.
Family and domain databases
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A0LZ79_GRAFK

Accession

Primary (citable) accession number: A0LZ79

Entry history

Integrated into UniProtKB/TrEMBL:	December 12, 2006
Last sequence update:	December 12, 2006
Last modified:	December 14, 2011
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)