A0LVJ6 (A0LVJ6_ACIC1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease PH HAMAP MF_00564
Short name=RNase PH HAMAP MF_00564
EC=2.7.7.56 HAMAP MF_00564

Alternative name(s):
tRNA nucleotidyltransferase HAMAP MF_00564

Gene names

Name:	rph HAMAP MF_00564
Ordered Locus Names:	Acel_1684

Organism

Acidothermus cellulolyticus (strain ATCC 43068 / 11B) [Complete proteome] [HAMAP]

Taxonomic identifier

351607 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Acidothermaceae › Acidothermus

Protein attributes

Sequence length	240 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP MF_00564 SAAS SAAS018336
Catalytic activity	tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP MF_00564 SAAS SAAS018336
Sequence similarities	Belongs to the RNase PH family. HAMAP MF_00564

Ontologies

Keywords
Biological process	tRNA processing HAMAP MF_00564 SAAS SAAS018336
Molecular function	Nucleotidyltransferase HAMAP MF_00564 SAAS SAAS018336 EMBL ABK53456.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tRNA processing Inferred from electronic annotation. Source: HAMAP
Molecular function	tRNA binding Inferred from electronic annotation. Source: HAMAP tRNA nucleotidyltransferase activity Inferred from electronic annotation. Source: HAMAP tRNA-specific ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0LVJ6 [UniParc]. Last modified December 12, 2006. Version 1. Checksum: FEA6BB80F5734CC5	FASTA	240	25,991
	10 20 30 40 50 60 MLRVDGRAAD ELRPVRFTRG WLLHAEGSVL VEFGRTRVLC AASVLEGVPK WRKGTGLGWV 70 80 90 100 110 120 TGEYAMLPRA TTTRTDRESV RGRLGGRTQE ISRLVGRSLR ACVEPARLGE NTVHLDCDVL 130 140 150 160 170 180 QADGGTRTAA ITGAYLALAD ACRWMRDHGW VTSDPLVRSV AAVSVGIVDG VPVLDLCYDE 190 200 210 220 230 240 DVRAGTDMNV VMTGDGDFVE IQGTAEGTPL RRDEVDALLE LATRGCARLT ELQRTALAEA

References

[1]

"Complete sequence of Acidothermus cellulolyticus 11B." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Zharchuk I., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Berry A.M., Adney W.S., Normand P., Leu D., Pujic P., Richardson P. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43068 / 11B.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000481 Genomic DNA. Translation: ABK53456.1.
RefSeq	YP_873442.1. NC_008578.1.
3D structure databases
ProteinModelPortal	A0LVJ6.
SMR	A0LVJ6. Positions 3-238.
ModBase	Search...
Protein-protein interaction databases
STRING	A0LVJ6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4486042.
GenomeReviews	Gene locus Acel_1684 in contig CP000481_GR.
KEGG	ace:Acel_1684.
PATRIC	20673944. VBIAciCel132453_1794.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0689.
HOGENOM	HBG737187.
OMA	MLPRATG.
PhylomeDB	A0LVJ6.
Family and domain databases
HAMAP	MF_00564. RNase_PH. [Tree]
InterPro	IPR001247. ExoRNase_PH_dom1. IPR015847. ExoRNase_PH_dom2. IPR020568. Ribosomal_S5_D2-typ_fold. IPR002381. RNase_PH_bac-type. IPR018336. RNase_PH_CS. [Graphical view]
KO	K00989.
Pfam	PF01138. RNase_PH. 1 hit. PF03725. RNase_PH_C. 1 hit. [Graphical view]
SUPFAM	SSF55666. 3_ExoRNase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01966. RNasePH. 1 hit.
PROSITE	PS01277. RIBONUCLEASE_PH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0LVJ6_ACIC1

Accession

Primary (citable) accession number: A0LVJ6

Entry history

Integrated into UniProtKB/TrEMBL:	December 12, 2006
Last sequence update:	December 12, 2006
Last modified:	December 14, 2011
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)