A0LNN6 (A0LNN6_SYNFM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Aspartyl-tRNA synthetase EMBL ABK19038.1
EC=6.1.1.12 EMBL ABK19038.1

Gene names

Ordered Locus Names:

Sfum_3365

Organism

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) [Complete proteome] [HAMAP]

Taxonomic identifier

335543 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Syntrophobacterales › Syntrophobacteraceae › Syntrophobacter

Protein attributes

Sequence length	705 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746

Ontologies

Keywords
Biological process	Protein biosynthesis RuleBase RU003747
Ligand	ATP-binding RuleBase RU003747 Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase RuleBase RU003747 EMBL ABK19038.1 Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of translational fidelity Inferred from electronic annotation. Source: InterPro tRNA aminoacylation for protein translation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW aspartate-tRNA ligase activity Inferred from electronic annotation. Source: EC nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0LNN6 [UniParc]. Last modified December 12, 2006. Version 1. Checksum: 95809E6309F08DC7	FASTA	705	79,498
	10 20 30 40 50 60 MAENDRSFCG NLSLSDVGSE VCLSGWVDAL RDHGEVLFIH LRDRTGFIQA VFSPEHTPRR 70 80 90 100 110 120 VYELASSLRS EFCVSLQGRV QRRTEETENP HIETGKIEVM VRELSILAAS VVLPFPISEK 130 140 150 160 170 180 AMTAGGGSGR ADAVSEDLRL QYRYLDLRRP SMQDHLAKRY RIIKRARDFL DTRGFLEIET 190 200 210 220 230 240 PILTKSTPEG ARDYLVPSRV HPKEFYALPQ SPQLFKQLLM MAGFERYFQV VRCFRDEDLR 250 260 270 280 290 300 PNRQPEFTQL DMEASFIDEE FIFELTEELV ARMFEVGGIE LPRPFPRMPY GEAMETYGSD 310 320 330 340 350 360 RPDTRFDLKF IEATDIFENT RYGIFKQILQ RGGRIKGINV SGQSEKLSKN VLQNEYAKEI 370 380 390 400 410 420 VPSFGAKGMT WMRVSAGGLD SNIVQFFSEE EKGAVLRRFH ARDGDVILMI ADASHDLVLS 430 440 450 460 470 480 ALGQLRLHLA DRLGLIPPGV FHPLWVTDFP LFEATEDGVT SSHHPFTAPD RESFDPLDLQ 490 500 510 520 530 540 GLLDLRSRAY DLVVNGEELG GGSMRINKKD IQLRIFRALG LSEQEIEDKF GFFVRALDYG 550 560 570 580 590 600 APPHGGIALG LDRVVSMILR TPSIREVTAF PKNRSAYCPL TRAPSQVAQE QLRELGLTDM 610 620 630 640 650 660 GEARQVRLLQ ERKELIDSLS WVSRIGFDEA ERAAITTALA DAVRMVETLE GIDCDFEPLF 670 680 690 700 SPVSAVYRMG EKMGARECSL AATGEILKNA PSVKGNYYKV ASILE

References

[1]

"Complete sequence of Syntrophobacter fumaroxidans MPOB." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E.G., Martinez M., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Boone D.R. , Brockman F., Culley D., Ferry J., Gunsalus R., McInerney M.J., Morrison M., Plugge C., Rohlin L., Scholten J., Sieber J., Stams A.J.M., Worm P., Henstra A.M., Richardson P. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 10017 / MPOB.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000478 Genomic DNA. Translation: ABK19038.1.
RefSeq	YP_847473.1. NC_008554.1.
3D structure databases
ProteinModelPortal	A0LNN6.
ModBase	Search...
Protein-protein interaction databases
STRING	A0LNN6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4457647.
GenomeReviews	Gene locus Sfum_3365 in contig CP000478_GR.
KEGG	sfu:Sfum_3365.
NMPDR	fig|335543.6.peg.3465.
PATRIC	23852875. VBISynFum78438_3992.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0173.
HOGENOM	HBG396032.
OMA	NEYAKEI.
ProtClustDB	PRK12820.
Enzyme and pathway databases
BioCyc	SFUM335543:SFUM_3365-MONOMER.
Family and domain databases
HAMAP	MF_00044_B. Asp_tRNA_synth_B. [Tree]
InterPro	IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II. IPR004524. Asp-tRNA-synth_IIb_bac/mt. IPR002312. Asp/Asn-tRNA-synth_IIb. IPR004115. GAD_dom. IPR003837. Glu-tRNAGlntrans. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR004365. NA-bd_OB_tRNA-helicase. [Graphical view]
Gene3D	G3DSA:3.30.1360.30. GAD_dom. 1 hit. G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K01876.
PANTHER	PTHR22594. aa-tRNA-synt_II. 1 hit. PTHR22594:SF5. AspS_bac. 1 hit.
Pfam	PF02938. GAD. 1 hit. PF02686. Glu-tRNAGln. 1 hit. PF00152. tRNA-synt_2. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view]
PRINTS	PR01042. TRNASYNTHASP.
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF55261. SSF55261. 1 hit.
TIGRFAMs	TIGR00459. AspS_bact. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0LNN6_SYNFM

Accession

Primary (citable) accession number: A0LNN6

Entry history

Integrated into UniProtKB/TrEMBL:	December 12, 2006
Last sequence update:	December 12, 2006
Last modified:	December 14, 2011
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)