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Protein
Submitted name:

Type II site-specific deoxyribonuclease

Gene

Sfum_2533

Organism
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. magnesium ion binding Source: InterPro
  3. Type II site-specific deoxyribonuclease activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA restriction-modification system Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Enzyme and pathway databases

BioCyciSFUM335543:GH6P-2576-MONOMER.

Protein family/group databases

REBASEi13882. SfuMORF2532P.

Names & Taxonomyi

Protein namesi
Submitted name:
Type II site-specific deoxyribonucleaseImported (EC:3.1.21.4Imported)
Gene namesi
Ordered Locus Names:Sfum_2533Imported
OrganismiSyntrophobacter fumaroxidans (strain DSM 10017 / MPOB)Imported
Taxonomic identifieri335543 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaSyntrophobacteralesSyntrophobacteraceaeSyntrophobacter
ProteomesiUP000001784 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi335543.Sfum_2533.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG274694.
HOGENOMiHOG000015232.
KOiK01155.
OMAiDIWIRPD.
OrthoDBiEOG6W71XN.

Family and domain databases

InterProiIPR009528. Restrct_endonuc_II_BsuBI_C.
[Graphical view]
PfamiPF06616. BsuBI_PstI_RE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0LLA9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKKDNIESA LEILAALGLP RAQQNERSAL CLLALLNLIP GKAWAHSENP
60 70 80 90 100
LIGITPMMKF SGKYYGREYA PNTRETFRRQ TIHQFLQAGV ACYNPDRPDR
110 120 130 140 150
PVNSPKAVYQ ISPEALALLK TYGTNKWRAF LKRFLAIRKT LAQRYANERV
160 170 180 190 200
QKLISVRVAV DQKIRISPGE HSELIKAIIE SFAPRHAPGC RLVYVGDTGE
210 220 230 240 250
KWGYFDEKLL ADLGVTIDSH GKMPDVVLFY PEKHWLLLVE SVTSHGPVDS
260 270 280 290 300
KRHTELAVLF ADSSAGLVYV TAFPSRAVMQ RYLSEIAWET EVWIADAPSH
310 320 330
LIHFNGPRFL GPYDGKLGEK PKLADKGHLL PEYKTN
Length:336
Mass (Da):37,902
Last modified:December 12, 2006 - v1
Checksum:i5B68E265505748F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000478 Genomic DNA. Translation: ABK18211.1.
RefSeqiWP_011699379.1. NC_008554.1.
YP_846646.1. NC_008554.1.

Genome annotation databases

EnsemblBacteriaiABK18211; ABK18211; Sfum_2533.
KEGGisfu:Sfum_2533.
PATRICi23850877. VBISynFum78438_3004.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000478 Genomic DNA. Translation: ABK18211.1.
RefSeqiWP_011699379.1. NC_008554.1.
YP_846646.1. NC_008554.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi335543.Sfum_2533.

Protein family/group databases

REBASEi13882. SfuMORF2532P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK18211; ABK18211; Sfum_2533.
KEGGisfu:Sfum_2533.
PATRICi23850877. VBISynFum78438_3004.

Phylogenomic databases

eggNOGiNOG274694.
HOGENOMiHOG000015232.
KOiK01155.
OMAiDIWIRPD.
OrthoDBiEOG6W71XN.

Enzyme and pathway databases

BioCyciSFUM335543:GH6P-2576-MONOMER.

Family and domain databases

InterProiIPR009528. Restrct_endonuc_II_BsuBI_C.
[Graphical view]
PfamiPF06616. BsuBI_PstI_RE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 10017 / MPOBImported.

Entry informationi

Entry nameiA0LLA9_SYNFM
AccessioniPrimary (citable) accession number: A0LLA9
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: April 1, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.