A0LFQ8 (A0LFQ8_SYNFM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Arginine--tRNA ligase HAMAP MF_00123
EC=6.1.1.19 HAMAP MF_00123

Alternative name(s):
Arginyl-tRNA synthetase HAMAP MF_00123

Gene names

Name:	argS HAMAP MF_00123
Ordered Locus Names:	Sfum_0561

Organism

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) [Complete proteome] [HAMAP]

Taxonomic identifier

335543 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Syntrophobacterales › Syntrophobacteraceae › Syntrophobacter

Protein attributes

Sequence length	559 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP MF_00123
Subunit structure	Monomer By similarity. HAMAP MF_00123
Subcellular location	Cytoplasm By similarity HAMAP MF_00123.
Sequence similarities	Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP MF_00123 RuleBase RU003489

Ontologies

Keywords
Biological process	Protein biosynthesis HAMAP MF_00123 RuleBase RU003489
Cellular component	Cytoplasm HAMAP MF_00123
Ligand	ATP-binding HAMAP MF_00123 RuleBase RU003489 Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase HAMAP MF_00123 RuleBase RU003489 EMBL ABK16260.1 Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginyl-tRNA aminoacylation Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP arginine-tRNA ligase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Motif	131 – 141	11	"HIGH" region By similarity HAMAP MF_00123

Sequences

	Sequence		Length	Mass (Da)
	A0LFQ8 [UniParc]. Last modified December 12, 2006. Version 1. Checksum: 06C552A6D8974435	FASTA	559	63,053
	10 20 30 40 50 60 MSTVRNVLIG MLSDSLSRLL PEASEHLDPT CIELDIPKLP EHGDYATNVA LALTRRLKRN 70 80 90 100 110 120 PREIAGKIVG GLNDPDNLLQ KVEIAGPGFI NFFFHPRAWH GILTDILADP RNYGRLDLGE 130 140 150 160 170 180 GHRVQVEFVS ANPTGPLHIG HGRGAATGDA LANILEACGY AVEREYYIND AGNQMDTLGR 190 200 210 220 230 240 SLYFRYQEAL GEPVEFPDAH YRGEYMKDLA RDFLRDNGDR YLRAPLDEVL PLFTRFAADR 250 260 270 280 290 300 ILEGIKDDLG EFGVSFDQWF SERSLHAEDA IRRTVEDLNR RGFIYESEGA VWFKSTAFGD 310 320 330 340 350 360 EKDRVVIRAN GVSTYFAADL AYHRNKYDRG YDKVVDIWGA DHHGYVERML AGVEALGRNR 370 380 390 400 410 420 EDLRIVLVQL VNLLRAGKPV AMSTRAGEFV TLREVVDEVG KDAARFIFLT RRSDSPLDFD 430 440 450 460 470 480 LDVAKARTND NPVFYVQYAH ARLCSIFQVA AERGLVCDWA NGKDIPDLGL LTLAQELQII 490 500 510 520 530 540 KFLGEYPAIL ANCSRSMEPH FIPYYLHELV SLFHSYYNQN RVIGDDPELT RARLFMAAAI 550 REVIRNALEL LGVSAPEKM

References

[1]

"Complete sequence of Syntrophobacter fumaroxidans MPOB." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E.G., Martinez M., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Boone D.R. , Brockman F., Culley D., Ferry J., Gunsalus R., McInerney M.J., Morrison M., Plugge C., Rohlin L., Scholten J., Sieber J., Stams A.J.M., Worm P., Henstra A.M., Richardson P. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 10017 / MPOB.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000478 Genomic DNA. Translation: ABK16260.1.
RefSeq	YP_844695.1. NC_008554.1.
3D structure databases
ProteinModelPortal	A0LFQ8.
ModBase	Search...
Protein-protein interaction databases
STRING	A0LFQ8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4461212.
GenomeReviews	Gene locus Sfum_0561 in contig CP000478_GR.
KEGG	sfu:Sfum_0561.
NMPDR	fig|335543.6.peg.581.
PATRIC	23846115. VBISynFum78438_0654.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0018.
HOGENOM	HBG695395.
OMA	FDVYFHE.
PhylomeDB	A0LFQ8.
Enzyme and pathway databases
BioCyc	SFUM335543:SFUM_0561-MONOMER.
Family and domain databases
HAMAP	MF_00123. Arg_tRNA_synth. [Tree]
InterPro	IPR001412. aa-tRNA-synth_I_CS. IPR001278. Arg-tRNA-synth_Ia. IPR015945. Arg-tRNA-synth_Ia_core. IPR005148. Arg-tRNA-synth_N. IPR008909. DALR_anticod-bd. IPR014729. Rossmann-like_a/b/a_fold. IPR009080. tRNAsynth_1a_anticodon-bd. [Graphical view]
Gene3D	G3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit. G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit.
KO	K01887.
PANTHER	PTHR11956. Arg_tRNA-synt_1c. 1 hit.
Pfam	PF03485. Arg_tRNA_synt_N. 1 hit. PF05746. DALR_1. 1 hit. PF00750. tRNA-synt_1d. 1 hit. [Graphical view]
PRINTS	PR01038. TRNASYNTHARG.
SMART	SM01016. Arg_tRNA_synt_N. 1 hit. SM00836. DALR_1. 1 hit. [Graphical view]
SUPFAM	SSF55190. Arg-tRNA-synth_Ic_N. 1 hit. SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMs	TIGR00456. ArgS. 1 hit.
PROSITE	PS00178. AA_TRNA_LIGASE_I. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0LFQ8_SYNFM

Accession

Primary (citable) accession number: A0LFQ8

Entry history

Integrated into UniProtKB/TrEMBL:	December 12, 2006
Last sequence update:	December 12, 2006
Last modified:	January 25, 2012
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)