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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Shewana3_2401

Organism
Shewanella sp. (strain ANA-3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSP94122:GJ9K-2496-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Shewana3_2401Imported
OrganismiShewanella sp. (strain ANA-3)Imported
Taxonomic identifieri94122 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000002589 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3524HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi94122.Shewana3_2401.

Structurei

3D structure databases

ProteinModelPortaliA0KXW1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini60 – 216157DNA_LIGASE_A3InterPro annotationAdd
BLAST
Domaini231 – 29565DNA_ligase_OB_2InterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105E1T. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiPOG091H05UG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

A0KXW1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLTTRLQFL TFAFVLRVAV FFGLYCGICG LFMAVSDANP EAPNIQLATE
60 70 80 90 100
FSKEKSAHIS DFLVSEKLDG VRGYWDGKRL MTRQGNPILA PSWFTADFPP
110 120 130 140 150
TPMDGELWLG RGRFEAISGL IRQASANESE WQNVRFMVFD LPKAQGSFAA
160 170 180 190 200
RYQQMQTLIA GKSVYLQVIE QVSVESVEAL YQKLDTLVAQ GGEGLILHRR
210 220 230 240 250
TALYTPGRNP NVMKLKPYLD AEAKVIGHIA GKGQFAGQLG ALRVQTADGR
260 270 280 290 300
VFSIGTGFSL AERQHPPAIG TLITYKYLGL TVNGLPRFAS FLRIRSDMPP

ENKE
Length:304
Mass (Da):33,659
Last modified:December 12, 2006 - v1
Checksum:iBCA44740B289D7E1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000469 Genomic DNA. Translation: ABK48630.1.
RefSeqiWP_011717330.1. NC_008577.1.

Genome annotation databases

EnsemblBacteriaiABK48630; ABK48630; Shewana3_2401.
KEGGishn:Shewana3_2401.
PATRICi23572672. VBISheSp134792_2720.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000469 Genomic DNA. Translation: ABK48630.1.
RefSeqiWP_011717330.1. NC_008577.1.

3D structure databases

ProteinModelPortaliA0KXW1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi94122.Shewana3_2401.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK48630; ABK48630; Shewana3_2401.
KEGGishn:Shewana3_2401.
PATRICi23572672. VBISheSp134792_2720.

Phylogenomic databases

eggNOGiENOG4105E1T. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiPOG091H05UG.

Enzyme and pathway databases

BioCyciSSP94122:GJ9K-2496-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA0KXW1_SHESA
AccessioniPrimary (citable) accession number: A0KXW1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: September 7, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.