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A0KU09

- DEOB_SHESA

UniProt

A0KU09 - DEOB_SHESA

Protein

Phosphopentomutase

Gene

deoB

Organism
Shewanella sp. (strain ANA-3)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 1 (12 Dec 2006)
      Previous versions | rss
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    Functioni

    Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotation

    Catalytic activityi

    Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
    2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

    Cofactori

    Binds 1 or 2 manganese ions.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi10 – 101ManganeseUniRule annotation
    Metal bindingi308 – 3081ManganeseUniRule annotation
    Metal bindingi344 – 3441ManganeseUniRule annotation
    Metal bindingi345 – 3451ManganeseUniRule annotation
    Metal bindingi356 – 3561ManganeseUniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. manganese ion binding Source: UniProtKB-HAMAP
    3. phosphopentomutase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
    2. cellular metabolic compound salvage Source: InterPro
    3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Isomerase

    Keywords - Ligandi

    Manganese, Metal-binding

    Enzyme and pathway databases

    BioCyciSSP94122:GJ9K-1079-MONOMER.
    UniPathwayiUPA00087; UER00173.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
    Alternative name(s):
    PhosphodeoxyribomutaseUniRule annotation
    Gene namesi
    Name:deoBUniRule annotation
    Ordered Locus Names:Shewana3_1043
    OrganismiShewanella sp. (strain ANA-3)
    Taxonomic identifieri94122 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000002589: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 404404PhosphopentomutasePRO_1000046400Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi94122.Shewana3_1043.

    Structurei

    3D structure databases

    ProteinModelPortaliA0KU09.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the phosphopentomutase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1015.
    HOGENOMiHOG000008159.
    KOiK01839.
    OMAiEHTREHI.
    OrthoDBiEOG6R5C7J.

    Family and domain databases

    Gene3Di3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPiMF_00740. Phosphopentomut.
    InterProiIPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view]
    PfamiPF01676. Metalloenzyme. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001491. Ppentomutase. 1 hit.
    SUPFAMiSSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsiTIGR01696. deoB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0KU09-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKRTVIMMLD SFGVGAAGDA AKFGDLGSDT FGHIAKACAE GEADIGREGP    50
    LTLPNLARLG LAHAAMESTG AFAPGFADNV ELIGAYGHAQ ELSSGKDTPS 100
    GHWEMAGVPV LFEWGYFSEH QNSFPKELTD KILARAGLDG FLGNCHASGT 150
    TILEELGEEH MRSGKPIFYT SADSVFQIAC HEGTFGLENL YRLCEIAREE 200
    LEPYNIGRVI ARPFDGTGPS DFARTGNRKD YSLEPPAKTV LDKLKAAGGE 250
    VVSVGKIADI YAYCGITKKV KANGLEALFD ATLAEVKSAG ENTIVFTNFV 300
    DFDSHYGHRR DVAGYAKGLE YFDSRLPEML ALLDEDDLLI LTADHGCDPT 350
    WQGTDHTREY VPVLAYGAGL KAGSLGRRNS FADIGQSIAS YFKLEPMEYG 400
    ESFI 404
    Length:404
    Mass (Da):43,596
    Last modified:December 12, 2006 - v1
    Checksum:i9035DE1B0BD3122E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000469 Genomic DNA. Translation: ABK47278.1.
    RefSeqiWP_011716154.1. NC_008577.1.
    YP_868684.1. NC_008577.1.

    Genome annotation databases

    EnsemblBacteriaiABK47278; ABK47278; Shewana3_1043.
    GeneIDi4479388.
    KEGGishn:Shewana3_1043.
    PATRICi23569726. VBISheSp134792_1308.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000469 Genomic DNA. Translation: ABK47278.1 .
    RefSeqi WP_011716154.1. NC_008577.1.
    YP_868684.1. NC_008577.1.

    3D structure databases

    ProteinModelPortali A0KU09.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 94122.Shewana3_1043.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABK47278 ; ABK47278 ; Shewana3_1043 .
    GeneIDi 4479388.
    KEGGi shn:Shewana3_1043.
    PATRICi 23569726. VBISheSp134792_1308.

    Phylogenomic databases

    eggNOGi COG1015.
    HOGENOMi HOG000008159.
    KOi K01839.
    OMAi EHTREHI.
    OrthoDBi EOG6R5C7J.

    Enzyme and pathway databases

    UniPathwayi UPA00087 ; UER00173 .
    BioCyci SSP94122:GJ9K-1079-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPi MF_00740. Phosphopentomut.
    InterProi IPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view ]
    Pfami PF01676. Metalloenzyme. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001491. Ppentomutase. 1 hit.
    SUPFAMi SSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsi TIGR01696. deoB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ANA-3.

    Entry informationi

    Entry nameiDEOB_SHESA
    AccessioniPrimary (citable) accession number: A0KU09
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: December 12, 2006
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3