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A0KU09

- DEOB_SHESA

UniProt

A0KU09 - DEOB_SHESA

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Protein

Phosphopentomutase

Gene

deoB

Organism
Shewanella sp. (strain ANA-3)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotation

Catalytic activityi

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

Cofactori

Binds 1 or 2 manganese ions.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi10 – 101ManganeseUniRule annotation
Metal bindingi308 – 3081ManganeseUniRule annotation
Metal bindingi344 – 3441ManganeseUniRule annotation
Metal bindingi345 – 3451ManganeseUniRule annotation
Metal bindingi356 – 3561ManganeseUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. manganese ion binding Source: UniProtKB-HAMAP
  3. phosphopentomutase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
  2. cellular metabolic compound salvage Source: InterPro
  3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciSSP94122:GJ9K-1079-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
Alternative name(s):
PhosphodeoxyribomutaseUniRule annotation
Gene namesi
Name:deoBUniRule annotation
Ordered Locus Names:Shewana3_1043
OrganismiShewanella sp. (strain ANA-3)
Taxonomic identifieri94122 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002589: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 404404PhosphopentomutasePRO_1000046400Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi94122.Shewana3_1043.

Structurei

3D structure databases

ProteinModelPortaliA0KU09.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the phosphopentomutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1015.
HOGENOMiHOG000008159.
KOiK01839.
OMAiEHTREHI.
OrthoDBiEOG6R5C7J.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

A0KU09-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKRTVIMMLD SFGVGAAGDA AKFGDLGSDT FGHIAKACAE GEADIGREGP
60 70 80 90 100
LTLPNLARLG LAHAAMESTG AFAPGFADNV ELIGAYGHAQ ELSSGKDTPS
110 120 130 140 150
GHWEMAGVPV LFEWGYFSEH QNSFPKELTD KILARAGLDG FLGNCHASGT
160 170 180 190 200
TILEELGEEH MRSGKPIFYT SADSVFQIAC HEGTFGLENL YRLCEIAREE
210 220 230 240 250
LEPYNIGRVI ARPFDGTGPS DFARTGNRKD YSLEPPAKTV LDKLKAAGGE
260 270 280 290 300
VVSVGKIADI YAYCGITKKV KANGLEALFD ATLAEVKSAG ENTIVFTNFV
310 320 330 340 350
DFDSHYGHRR DVAGYAKGLE YFDSRLPEML ALLDEDDLLI LTADHGCDPT
360 370 380 390 400
WQGTDHTREY VPVLAYGAGL KAGSLGRRNS FADIGQSIAS YFKLEPMEYG

ESFI
Length:404
Mass (Da):43,596
Last modified:December 12, 2006 - v1
Checksum:i9035DE1B0BD3122E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000469 Genomic DNA. Translation: ABK47278.1.
RefSeqiWP_011716154.1. NC_008577.1.
YP_868684.1. NC_008577.1.

Genome annotation databases

EnsemblBacteriaiABK47278; ABK47278; Shewana3_1043.
GeneIDi4479388.
KEGGishn:Shewana3_1043.
PATRICi23569726. VBISheSp134792_1308.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000469 Genomic DNA. Translation: ABK47278.1 .
RefSeqi WP_011716154.1. NC_008577.1.
YP_868684.1. NC_008577.1.

3D structure databases

ProteinModelPortali A0KU09.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 94122.Shewana3_1043.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK47278 ; ABK47278 ; Shewana3_1043 .
GeneIDi 4479388.
KEGGi shn:Shewana3_1043.
PATRICi 23569726. VBISheSp134792_1308.

Phylogenomic databases

eggNOGi COG1015.
HOGENOMi HOG000008159.
KOi K01839.
OMAi EHTREHI.
OrthoDBi EOG6R5C7J.

Enzyme and pathway databases

UniPathwayi UPA00087 ; UER00173 .
BioCyci SSP94122:GJ9K-1079-MONOMER.

Family and domain databases

Gene3Di 3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPi MF_00740. Phosphopentomut.
InterProi IPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view ]
Pfami PF01676. Metalloenzyme. 1 hit.
[Graphical view ]
PIRSFi PIRSF001491. Ppentomutase. 1 hit.
SUPFAMi SSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsi TIGR01696. deoB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ANA-3.

Entry informationi

Entry nameiDEOB_SHESA
AccessioniPrimary (citable) accession number: A0KU09
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: December 12, 2006
Last modified: October 29, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3