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A0KS72

- FIS_SHESA

UniProt

A0KS72 - FIS_SHESA

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Protein

DNA-binding protein Fis

Gene
fis, Shewana3_0398
Organism
Shewanella sp. (strain ANA-3)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters By similarity.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi77 – 9620H-T-H motif By similarityAdd
BLAST

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciSSP94122:GJ9K-419-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-binding protein Fis
Gene namesi
Name:fis
Ordered Locus Names:Shewana3_0398
OrganismiShewanella sp. (strain ANA-3)
Taxonomic identifieri94122 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002589: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 101101DNA-binding protein FisUniRule annotationPRO_1000023341Add
BLAST

Interactioni

Subunit structurei

Homodimer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi94122.Shewana3_0398.

Structurei

3D structure databases

ProteinModelPortaliA0KS72.
SMRiA0KS72. Positions 24-101.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG2901.
HOGENOMiHOG000256331.
KOiK03557.
OMAiHNQTRAA.
OrthoDBiEOG67HJXZ.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
HAMAPiMF_00166. DNA_binding_Fis.
InterProiIPR005412. Fis_DNA-bd.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
[Graphical view]
PfamiPF02954. HTH_8. 1 hit.
[Graphical view]
PIRSFiPIRSF002097. DNA-binding_Fis. 1 hit.
PRINTSiPR01591. DNABINDNGFIS.
PR01590. HTHFIS.
SUPFAMiSSF46689. SSF46689. 1 hit.

Sequencei

Sequence statusi: Complete.

A0KS72-1 [UniParc]FASTAAdd to Basket

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MFDQTTNTEV HQLTVGKIET ANGTIKPQLL RDAVKRAVTN FFAQLDGQEA    50
QEVYEMVLSE VEAPLLDIIM QHTRGNQTRA ANMLGINRGT LRKKLKKYGM 100
N 101
Length:101
Mass (Da):11,390
Last modified:December 12, 2006 - v1
Checksum:i4FD2982815CDCFA8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000469 Genomic DNA. Translation: ABK46641.1.
RefSeqiYP_868047.1. NC_008577.1.

Genome annotation databases

EnsemblBacteriaiABK46641; ABK46641; Shewana3_0398.
GeneIDi4479305.
KEGGishn:Shewana3_0398.
PATRICi23568372. VBISheSp134792_0646.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000469 Genomic DNA. Translation: ABK46641.1 .
RefSeqi YP_868047.1. NC_008577.1.

3D structure databases

ProteinModelPortali A0KS72.
SMRi A0KS72. Positions 24-101.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 94122.Shewana3_0398.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK46641 ; ABK46641 ; Shewana3_0398 .
GeneIDi 4479305.
KEGGi shn:Shewana3_0398.
PATRICi 23568372. VBISheSp134792_0646.

Phylogenomic databases

eggNOGi COG2901.
HOGENOMi HOG000256331.
KOi K03557.
OMAi HNQTRAA.
OrthoDBi EOG67HJXZ.

Enzyme and pathway databases

BioCyci SSP94122:GJ9K-419-MONOMER.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
HAMAPi MF_00166. DNA_binding_Fis.
InterProi IPR005412. Fis_DNA-bd.
IPR009057. Homeodomain-like.
IPR002197. HTH_Fis.
[Graphical view ]
Pfami PF02954. HTH_8. 1 hit.
[Graphical view ]
PIRSFi PIRSF002097. DNA-binding_Fis. 1 hit.
PRINTSi PR01591. DNABINDNGFIS.
PR01590. HTHFIS.
SUPFAMi SSF46689. SSF46689. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ANA-3.

Entry informationi

Entry nameiFIS_SHESA
AccessioniPrimary (citable) accession number: A0KS72
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: December 12, 2006
Last modified: May 14, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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