A0KDF0 (A0KDF0_BURCH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL ABK13213.1

Gene names

Ordered Locus Names:

Bcen2424_6483 EMBL ABK13213.1

Organism

Burkholderia cenocepacia (strain HI2424) [Complete proteome] [HAMAP] EMBL ABK13213.1

Taxonomic identifier

331272 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex › Burkholderia cenocepacia

Protein attributes

Sequence length	936 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABK13213.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0KDF0 [UniParc]. Last modified December 12, 2006. Version 1. Checksum: 890C89522B1D197C	FASTA	936	103,780
	10 20 30 40 50 60 MAGKLDPYRR KRHFGATPEP EGAHGKRRAK PDTQAASKPK AKQPAARARH PLRFVIQEHH 70 80 90 100 110 120 ARRLHYDFRL ELDGTLKSWA VPKGPSFDPQ VKRLAVHVED HPLEYASFEG EIPAGHYGAG 130 140 150 160 170 180 SVVVWDEGTW TPDGGVAQAR EGYRAGKLTF RLDGEKLHGG WALVRSGRQE GRQEQWLLIK 190 200 210 220 230 240 ERDDDARSAD EFDVVGERPG SVHDGAANGA ARKRAARRGR STDADGDVHD AQHASHESHE 250 260 270 280 290 300 SHESHASHRP TDPSQVEGAV RAPLPERVAP QLATLVDAPP TQGGWCYELK FDGYRILARI 310 320 330 340 350 360 AGKGARRRVT LMTREGRDWT AKLRAQRDAL AALDVDDAWL DGEAVVLGEN GLPDFQALQN 370 380 390 400 410 420 AFGTDRSDAI TFFVFDLPYL DGYDLRDASL NDRRALLEPL LANSDPARVR FSPDLGEDVA 430 440 450 460 470 480 SLIASACDTG LEGLIGKRAD SRYRAGRSPA WIKLKCRRRQ EFVIGGFTEP SGSRHGFGAL 490 500 510 520 530 540 LLGVHEPAPA GKRRRGPGPL RYVGRVGTGF DARMLDRLAA ILRKHERDTM PFDEPPRERT 550 560 570 580 590 600 RTRVHWVEPT LVAECEFAEW TGDGIVRQAA FIALREDKPA AQIVREMPKH TETEVTMDQR 610 620 630 640 650 660 PTPHDDTRKR ASHAARESAD RKQSARSRAA ARAEDDASGP DTLGRVRITH PERVLDPQSG 670 680 690 700 710 720 TRKIDLARYW QWVAPWLLPD LEGRPVSLVR APGDIAGELF FQKHAERREI PFVTQHEGLD 730 740 750 760 770 780 PGHGPLLSID NVDALLGAAQ MGTVELHTWN AHASNIERPD RIVFDLDPDP ALPWRTMIDA 790 800 810 820 830 840 AQLVRGLLDE LGLVSFCKTS GGKGLHVVVP LTRHAGWDDV KDFSRAVAQH VAGTLPDRFT 850 860 870 880 890 900 ATMGPRHRRG KIFVDYLRNG RGASTIAAYS VRARPGMGVS VPLDWDEVPD TTGGAQWTID 910 920 930 TLHERLDTLK RDPWEGYAKA RQRITAAMRA RLGADT

References

[1]

"Complete sequence of chromosome 3 of Burkholderia cenocepacia HI2424." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Kim E., LiPuma J.J., Gonzalez C.F., Konstantinidis K., Tiedje J.M., Richardson P. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HI2424.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000460 Genomic DNA. Translation: ABK13213.1.
RefSeq	YP_840106.1. NC_008544.1.
3D structure databases
ProteinModelPortal	A0KDF0.
SMR	A0KDF0. Positions 645-932.
ModBase	Search...
Protein-protein interaction databases
STRING	331272.Bcen2424_6483.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABK13213; ABK13213; Bcen2424_6483.
GeneID	4454252.
KEGG	bch:Bcen2424_6483.
PATRIC	19070693. VBIBurCen15205_6657.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	CLSK954720.
Enzyme and pathway databases
BioCyc	BCEN331272:GHR7-782-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0KDF0_BURCH

Accession

Primary (citable) accession number: A0KDF0

Entry history

Integrated into UniProtKB/TrEMBL:	December 12, 2006
Last sequence update:	December 12, 2006
Last modified:	May 1, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)