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A0KDF0

- A0KDF0_BURCH

UniProt

A0KDF0 - A0KDF0_BURCH

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Bcen2424_6483

Organism
Burkholderia cenocepacia (strain HI2424)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (12 Dec 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBCEN331272:GHR7-6568-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
    Gene namesi
    Ordered Locus Names:Bcen2424_6483Imported
    OrganismiBurkholderia cenocepacia (strain HI2424)Imported
    Taxonomic identifieri331272 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
    ProteomesiUP000000776: Chromosome 3

    Interactioni

    Protein-protein interaction databases

    STRINGi331272.Bcen2424_6483.

    Structurei

    3D structure databases

    ProteinModelPortaliA0KDF0.
    SMRiA0KDF0. Positions 645-932.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A0KDF0-1 [UniParc]FASTAAdd to Basket

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    MAGKLDPYRR KRHFGATPEP EGAHGKRRAK PDTQAASKPK AKQPAARARH    50
    PLRFVIQEHH ARRLHYDFRL ELDGTLKSWA VPKGPSFDPQ VKRLAVHVED 100
    HPLEYASFEG EIPAGHYGAG SVVVWDEGTW TPDGGVAQAR EGYRAGKLTF 150
    RLDGEKLHGG WALVRSGRQE GRQEQWLLIK ERDDDARSAD EFDVVGERPG 200
    SVHDGAANGA ARKRAARRGR STDADGDVHD AQHASHESHE SHESHASHRP 250
    TDPSQVEGAV RAPLPERVAP QLATLVDAPP TQGGWCYELK FDGYRILARI 300
    AGKGARRRVT LMTREGRDWT AKLRAQRDAL AALDVDDAWL DGEAVVLGEN 350
    GLPDFQALQN AFGTDRSDAI TFFVFDLPYL DGYDLRDASL NDRRALLEPL 400
    LANSDPARVR FSPDLGEDVA SLIASACDTG LEGLIGKRAD SRYRAGRSPA 450
    WIKLKCRRRQ EFVIGGFTEP SGSRHGFGAL LLGVHEPAPA GKRRRGPGPL 500
    RYVGRVGTGF DARMLDRLAA ILRKHERDTM PFDEPPRERT RTRVHWVEPT 550
    LVAECEFAEW TGDGIVRQAA FIALREDKPA AQIVREMPKH TETEVTMDQR 600
    PTPHDDTRKR ASHAARESAD RKQSARSRAA ARAEDDASGP DTLGRVRITH 650
    PERVLDPQSG TRKIDLARYW QWVAPWLLPD LEGRPVSLVR APGDIAGELF 700
    FQKHAERREI PFVTQHEGLD PGHGPLLSID NVDALLGAAQ MGTVELHTWN 750
    AHASNIERPD RIVFDLDPDP ALPWRTMIDA AQLVRGLLDE LGLVSFCKTS 800
    GGKGLHVVVP LTRHAGWDDV KDFSRAVAQH VAGTLPDRFT ATMGPRHRRG 850
    KIFVDYLRNG RGASTIAAYS VRARPGMGVS VPLDWDEVPD TTGGAQWTID 900
    TLHERLDTLK RDPWEGYAKA RQRITAAMRA RLGADT 936
    Length:936
    Mass (Da):103,780
    Last modified:December 12, 2006 - v1
    Checksum:i890C89522B1D197C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000460 Genomic DNA. Translation: ABK13213.1.
    RefSeqiWP_011695006.1. NC_008544.1.
    YP_840106.1. NC_008544.1.

    Genome annotation databases

    EnsemblBacteriaiABK13213; ABK13213; Bcen2424_6483.
    GeneIDi4454252.
    KEGGibch:Bcen2424_6483.
    PATRICi19070693. VBIBurCen15205_6657.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000460 Genomic DNA. Translation: ABK13213.1 .
    RefSeqi WP_011695006.1. NC_008544.1.
    YP_840106.1. NC_008544.1.

    3D structure databases

    ProteinModelPortali A0KDF0.
    SMRi A0KDF0. Positions 645-932.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 331272.Bcen2424_6483.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABK13213 ; ABK13213 ; Bcen2424_6483 .
    GeneIDi 4454252.
    KEGGi bch:Bcen2424_6483.
    PATRICi 19070693. VBIBurCen15205_6657.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BCEN331272:GHR7-6568-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 3 of Burkholderia cenocepacia HI2424."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
      , Kim E., LiPuma J.J., Gonzalez C.F., Konstantinidis K., Tiedje J.M., Richardson P.
      Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HI2424Imported.

    Entry informationi

    Entry nameiA0KDF0_BURCH
    AccessioniPrimary (citable) accession number: A0KDF0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 12, 2006
    Last sequence update: December 12, 2006
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3