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A0KDF0

- A0KDF0_BURCH

UniProt

A0KDF0 - A0KDF0_BURCH

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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene
Bcen2424_6483
Organism
Burkholderia cenocepacia (strain HI2424)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBCEN331272:GHR7-6568-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Bcen2424_6483Imported
OrganismiBurkholderia cenocepacia (strain HI2424)Imported
Taxonomic identifieri331272 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000776: Chromosome 3

Interactioni

Protein-protein interaction databases

STRINGi331272.Bcen2424_6483.

Structurei

3D structure databases

ProteinModelPortaliA0KDF0.
SMRiA0KDF0. Positions 645-932.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0KDF0-1 [UniParc]FASTAAdd to Basket

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MAGKLDPYRR KRHFGATPEP EGAHGKRRAK PDTQAASKPK AKQPAARARH    50
PLRFVIQEHH ARRLHYDFRL ELDGTLKSWA VPKGPSFDPQ VKRLAVHVED 100
HPLEYASFEG EIPAGHYGAG SVVVWDEGTW TPDGGVAQAR EGYRAGKLTF 150
RLDGEKLHGG WALVRSGRQE GRQEQWLLIK ERDDDARSAD EFDVVGERPG 200
SVHDGAANGA ARKRAARRGR STDADGDVHD AQHASHESHE SHESHASHRP 250
TDPSQVEGAV RAPLPERVAP QLATLVDAPP TQGGWCYELK FDGYRILARI 300
AGKGARRRVT LMTREGRDWT AKLRAQRDAL AALDVDDAWL DGEAVVLGEN 350
GLPDFQALQN AFGTDRSDAI TFFVFDLPYL DGYDLRDASL NDRRALLEPL 400
LANSDPARVR FSPDLGEDVA SLIASACDTG LEGLIGKRAD SRYRAGRSPA 450
WIKLKCRRRQ EFVIGGFTEP SGSRHGFGAL LLGVHEPAPA GKRRRGPGPL 500
RYVGRVGTGF DARMLDRLAA ILRKHERDTM PFDEPPRERT RTRVHWVEPT 550
LVAECEFAEW TGDGIVRQAA FIALREDKPA AQIVREMPKH TETEVTMDQR 600
PTPHDDTRKR ASHAARESAD RKQSARSRAA ARAEDDASGP DTLGRVRITH 650
PERVLDPQSG TRKIDLARYW QWVAPWLLPD LEGRPVSLVR APGDIAGELF 700
FQKHAERREI PFVTQHEGLD PGHGPLLSID NVDALLGAAQ MGTVELHTWN 750
AHASNIERPD RIVFDLDPDP ALPWRTMIDA AQLVRGLLDE LGLVSFCKTS 800
GGKGLHVVVP LTRHAGWDDV KDFSRAVAQH VAGTLPDRFT ATMGPRHRRG 850
KIFVDYLRNG RGASTIAAYS VRARPGMGVS VPLDWDEVPD TTGGAQWTID 900
TLHERLDTLK RDPWEGYAKA RQRITAAMRA RLGADT 936
Length:936
Mass (Da):103,780
Last modified:December 12, 2006 - v1
Checksum:i890C89522B1D197C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000460 Genomic DNA. Translation: ABK13213.1.
RefSeqiWP_011695006.1. NC_008544.1.
YP_840106.1. NC_008544.1.

Genome annotation databases

EnsemblBacteriaiABK13213; ABK13213; Bcen2424_6483.
GeneIDi4454252.
KEGGibch:Bcen2424_6483.
PATRICi19070693. VBIBurCen15205_6657.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000460 Genomic DNA. Translation: ABK13213.1 .
RefSeqi WP_011695006.1. NC_008544.1.
YP_840106.1. NC_008544.1.

3D structure databases

ProteinModelPortali A0KDF0.
SMRi A0KDF0. Positions 645-932.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 331272.Bcen2424_6483.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK13213 ; ABK13213 ; Bcen2424_6483 .
GeneIDi 4454252.
KEGGi bch:Bcen2424_6483.
PATRICi 19070693. VBIBurCen15205_6657.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BCEN331272:GHR7-6568-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 3 of Burkholderia cenocepacia HI2424."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
    , Kim E., LiPuma J.J., Gonzalez C.F., Konstantinidis K., Tiedje J.M., Richardson P.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HI2424.

Entry informationi

Entry nameiA0KDF0_BURCH
AccessioniPrimary (citable) accession number: A0KDF0
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: September 3, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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