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A0KDF0 (A0KDF0_BURCH) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Bcen2424_6483 EMBL ABK13213.1
OrganismBurkholderia cenocepacia (strain HI2424) [Complete proteome] [HAMAP] EMBL ABK13213.1
Taxonomic identifier331272 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex

Protein attributes

Sequence length936 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A0KDF0 [UniParc].

Last modified December 12, 2006. Version 1.
Checksum: 890C89522B1D197C

FASTA936103,780
        10         20         30         40         50         60 
MAGKLDPYRR KRHFGATPEP EGAHGKRRAK PDTQAASKPK AKQPAARARH PLRFVIQEHH 

        70         80         90        100        110        120 
ARRLHYDFRL ELDGTLKSWA VPKGPSFDPQ VKRLAVHVED HPLEYASFEG EIPAGHYGAG 

       130        140        150        160        170        180 
SVVVWDEGTW TPDGGVAQAR EGYRAGKLTF RLDGEKLHGG WALVRSGRQE GRQEQWLLIK 

       190        200        210        220        230        240 
ERDDDARSAD EFDVVGERPG SVHDGAANGA ARKRAARRGR STDADGDVHD AQHASHESHE 

       250        260        270        280        290        300 
SHESHASHRP TDPSQVEGAV RAPLPERVAP QLATLVDAPP TQGGWCYELK FDGYRILARI 

       310        320        330        340        350        360 
AGKGARRRVT LMTREGRDWT AKLRAQRDAL AALDVDDAWL DGEAVVLGEN GLPDFQALQN 

       370        380        390        400        410        420 
AFGTDRSDAI TFFVFDLPYL DGYDLRDASL NDRRALLEPL LANSDPARVR FSPDLGEDVA 

       430        440        450        460        470        480 
SLIASACDTG LEGLIGKRAD SRYRAGRSPA WIKLKCRRRQ EFVIGGFTEP SGSRHGFGAL 

       490        500        510        520        530        540 
LLGVHEPAPA GKRRRGPGPL RYVGRVGTGF DARMLDRLAA ILRKHERDTM PFDEPPRERT 

       550        560        570        580        590        600 
RTRVHWVEPT LVAECEFAEW TGDGIVRQAA FIALREDKPA AQIVREMPKH TETEVTMDQR 

       610        620        630        640        650        660 
PTPHDDTRKR ASHAARESAD RKQSARSRAA ARAEDDASGP DTLGRVRITH PERVLDPQSG 

       670        680        690        700        710        720 
TRKIDLARYW QWVAPWLLPD LEGRPVSLVR APGDIAGELF FQKHAERREI PFVTQHEGLD 

       730        740        750        760        770        780 
PGHGPLLSID NVDALLGAAQ MGTVELHTWN AHASNIERPD RIVFDLDPDP ALPWRTMIDA 

       790        800        810        820        830        840 
AQLVRGLLDE LGLVSFCKTS GGKGLHVVVP LTRHAGWDDV KDFSRAVAQH VAGTLPDRFT 

       850        860        870        880        890        900 
ATMGPRHRRG KIFVDYLRNG RGASTIAAYS VRARPGMGVS VPLDWDEVPD TTGGAQWTID 

       910        920        930 
TLHERLDTLK RDPWEGYAKA RQRITAAMRA RLGADT 

« Hide

References

[1]"Complete sequence of chromosome 3 of Burkholderia cenocepacia HI2424."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., LiPuma J.J., Gonzalez C.F., Konstantinidis K., Tiedje J.M., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HI2424.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000460 Genomic DNA. Translation: ABK13213.1.
RefSeqYP_840106.1. NC_008544.1.

3D structure databases

ProteinModelPortalA0KDF0.
SMRA0KDF0. Positions 645-932.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING331272.Bcen2424_6483.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABK13213; ABK13213; Bcen2424_6483.
GeneID4454252.
KEGGbch:Bcen2424_6483.
PATRIC19070693. VBIBurCen15205_6657.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMANGLPDFQ.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycBCEN331272:GHR7-6568-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA0KDF0_BURCH
AccessionPrimary (citable) accession number: A0KDF0
Entry history
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: May 14, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)