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Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Arthrobacter sp. (strain FB24)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'UniRule annotation
Transcriptase subunit beta'UniRule annotation
Gene namesi
Name:rpoCUniRule annotation
Ordered Locus Names:Arth_2983
OrganismiArthrobacter sp. (strain FB24)
Taxonomic identifieri290399 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesMicrococcaceaeArthrobacter
Proteomesi
  • UP000000754 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003088191 – 1299DNA-directed RNA polymerase subunit beta'Add BLAST1299

Proteomic databases

PRIDEiA0JZ92.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi290399.Arth_2983.

Structurei

3D structure databases

ProteinModelPortaliA0JZ92.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D27. Bacteria.
COG0086. LUCA.
HOGENOMiHOG000218387.
KOiK03046.
OMAiYFAAYMI.
OrthoDBiPOG091H02K5.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC. 1 hit.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 2 hits.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

A0JZ92-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSESSFGLM QIGLATAEDI RGWSYGEVKK PETINYRTLK PEKDGLFCEK
60 70 80 90 100
IFGPSRDWEC YCGKYKRVRF KGIICERCGV EVTRAKVRRE RMGHIELAAP
110 120 130 140 150
VTHIWYFKGV PSRLGYLLDL APKDLEKVIY FAAYMITSVD TDSRHEELPN
160 170 180 190 200
LQVEHDIEKK QLVDNRDSDI ATIARDLENE LARLEGEGAK AADKKKARDS
210 220 230 240 250
ADRQMANVRK RADADIERLE QVWDRFKNLK VADLEGDEGL YRELRDRYGM
260 270 280 290 300
YFEGSMGAEA IKKRLENFDM QAESDLLRDI IANGKGQRKT RALKRLKVVN
310 320 330 340 350
AFLTTNNSPL GMVLDAVPVI PPELRPMVQL DGGRFATSDL NDLYRRVINR
360 370 380 390 400
NNRLKRLLDL GAPEIIVNNE KRMLQEAVDS LFDNGRRGRP VTGPGNRPLK
410 420 430 440 450
SLSDMLKGKQ GRFRQNLLGK RVDYSGRSVI VVGPQLKLHQ CGLPKQMALE
460 470 480 490 500
LFKPFVMKRL VDLNHAQNIK SAKRMVERYR PQVWDVLEEI ITEHPVLLNR
510 520 530 540 550
APTLHRLGIQ AFEPQLVEGK AIQLHPLVCG AFNADFDGDQ MAVHLPLSPE
560 570 580 590 600
AQAEARILML SSNNILKPSD GRPVTLPSQD MIIGLYHLTT KRVGSAGEGR
610 620 630 640 650
IFSSVSEAIM AFDLHELHLN SQVKIRLEGF VPYAGWEAPE GWEPGQTALV
660 670 680 690 700
QTSLGQVIFN QTLPEDYPWV EAVADKGELS RIVNDLAERY PKVVTAATLD
710 720 730 740 750
NLKDAGFYWA TRSGVTVAIS DIEVPAEKPV ILAGYEERAA KIQGQYDKGL
760 770 780 790 800
IDDDERRQEL IEIWNKATNE IAQVMRDNLS PMNTINRMVS SGARGNWMQV
810 820 830 840 850
RQIAGIRGLV ANPKGEIIPR PIKSSYREGL SVLEYFIATH GARKGLADTA
860 870 880 890 900
LRTANSGYLT RRLVDVSQDV IVREEDCGTE RGLVTPIAVA DANGELVLDE
910 920 930 940 950
NVENSAYART LAVDVVDSKG KVLAAGGTDC GDVVIAELFA AGITEVKVRS
960 970 980 990 1000
VLTCESSVGT CALCYGRSLA TGKTVDIGEA VGIIAAQSIG EPGTQLTMRT
1010 1020 1030 1040 1050
FHTGGAVSAS GGDDITQGLP RIQELFEART PKGVAPIAEA AGRIAIEESE
1060 1070 1080 1090 1100
RQMRLVITPD DGSEEIAYPV LRRSRLLIED GQHVAVGQKL INGPVDPKQV
1110 1120 1130 1140 1150
LRIMGPRAAQ KFLVDEVQGV YRSQGIGIHD KHVEVIVRQM LRRVTVIESG
1160 1170 1180 1190 1200
ESDLLPGELA ERSRFEDANR RVVSEGKTPA SGRPELMGIT KASLATESWL
1210 1220 1230 1240 1250
SAASFQETTR VLTQAAMEGK SDPLLGLKEN VIIGKLIPAG TGLPRYTEVT
1260 1270 1280 1290
VEPTEEAKAN LFTGPSAFSD FSYDTLGGDG APEFHAIPLD DYDLGSDFR
Length:1,299
Mass (Da):143,599
Last modified:December 12, 2006 - v1
Checksum:iCFF447A85187FA0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000454 Genomic DNA. Translation: ABK04362.1.
RefSeqiWP_011692815.1. NC_008541.1.

Genome annotation databases

EnsemblBacteriaiABK04362; ABK04362; Arth_2983.
KEGGiart:Arth_2983.
PATRICi21001381. VBIArtSp72239_3373.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000454 Genomic DNA. Translation: ABK04362.1.
RefSeqiWP_011692815.1. NC_008541.1.

3D structure databases

ProteinModelPortaliA0JZ92.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi290399.Arth_2983.

Proteomic databases

PRIDEiA0JZ92.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK04362; ABK04362; Arth_2983.
KEGGiart:Arth_2983.
PATRICi21001381. VBIArtSp72239_3373.

Phylogenomic databases

eggNOGiENOG4105D27. Bacteria.
COG0086. LUCA.
HOGENOMiHOG000218387.
KOiK03046.
OMAiYFAAYMI.
OrthoDBiPOG091H02K5.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC. 1 hit.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 2 hits.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRPOC_ARTS2
AccessioniPrimary (citable) accession number: A0JZ92
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: December 12, 2006
Last modified: November 2, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.