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Protein

Carbamoyl-phosphate synthase large chain

Gene

carB

Organism
Arthrobacter sp. (strain FB24)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

2 ATP + L-glutamine + HCO3- + H2O = 2 ADP + phosphate + L-glutamate + carbamoyl phosphate.UniRule annotation

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 4 Mg2+ or Mn2+ ions per subunit.By similarity

Pathwayi: L-arginine biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes carbamoyl phosphate from bicarbonate.UniRule annotation
Proteins known to be involved in this subpathway in this organism are:
  1. Carbamoyl-phosphate synthase large chain (carB), Carbamoyl-phosphate synthase small chain (carA)
This subpathway is part of the pathway L-arginine biosynthesis, which is itself part of Amino-acid biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes carbamoyl phosphate from bicarbonate, the pathway L-arginine biosynthesis and in Amino-acid biosynthesis.

Pathwayi: UMP biosynthesis via de novo pathway

This protein is involved in step 1 of the subpathway that synthesizes (S)-dihydroorotate from bicarbonate.UniRule annotation
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. Carbamoyl-phosphate synthase large chain (carB), Carbamoyl-phosphate synthase small chain (carA)
  2. Aspartate carbamoyltransferase (pyrB)
  3. Dihydroorotase (pyrC)
This subpathway is part of the pathway UMP biosynthesis via de novo pathway, which is itself part of Pyrimidine metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes (S)-dihydroorotate from bicarbonate, the pathway UMP biosynthesis via de novo pathway and in Pyrimidine metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi285Magnesium or manganese 1UniRule annotation1
Metal bindingi299Magnesium or manganese 1UniRule annotation1
Metal bindingi299Magnesium or manganese 2UniRule annotation1
Metal bindingi301Magnesium or manganese 2UniRule annotation1
Metal bindingi827Magnesium or manganese 3UniRule annotation1
Metal bindingi839Magnesium or manganese 3UniRule annotation1
Metal bindingi839Magnesium or manganese 4UniRule annotation1
Metal bindingi841Magnesium or manganese 4UniRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi159 – 216ATPUniRule annotationAdd BLAST58
Nucleotide bindingi703 – 760ATPUniRule annotationAdd BLAST58

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigase
Biological processAmino-acid biosynthesis, Arginine biosynthesis, Pyrimidine biosynthesis
LigandATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

UniPathwayiUPA00068; UER00171
UPA00070; UER00115

Names & Taxonomyi

Protein namesi
Recommended name:
Carbamoyl-phosphate synthase large chainUniRule annotation (EC:6.3.5.5UniRule annotation)
Alternative name(s):
Carbamoyl-phosphate synthetase ammonia chainUniRule annotation
Gene namesi
Name:carBUniRule annotation
Ordered Locus Names:Arth_2262
OrganismiArthrobacter sp. (strain FB24)
Taxonomic identifieri290399 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesMicrococcaceaeArthrobacter
Proteomesi
  • UP000000754 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000663351 – 1099Carbamoyl-phosphate synthase large chainAdd BLAST1099

Proteomic databases

PRIDEiA0JX72

Interactioni

Subunit structurei

Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.UniRule annotation

Protein-protein interaction databases

STRINGi290399.Arth_2262

Structurei

3D structure databases

ProteinModelPortaliA0JX72
SMRiA0JX72
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini133 – 328ATP-grasp 1UniRule annotationAdd BLAST196
Domaini677 – 868ATP-grasp 2UniRule annotationAdd BLAST192
Domaini951 – 1099MGS-likePROSITE-ProRule annotationAdd BLAST149

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni1 – 402Carboxyphosphate synthetic domainAdd BLAST402
Regioni403 – 548Oligomerization domainAdd BLAST146
Regioni549 – 950Carbamoyl phosphate synthetic domainAdd BLAST402
Regioni951 – 1099Allosteric domainAdd BLAST149

Sequence similaritiesi

Belongs to the CarB family.UniRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105CU6 Bacteria
COG0458 LUCA
HOGENOMiHOG000234582
KOiK01955
OMAiAVFPFNK
OrthoDBiPOG091H01IP

Family and domain databases

CDDicd01424 MGS_CPS_II, 1 hit
Gene3Di1.10.1030.10, 1 hit
3.40.50.1380, 1 hit
HAMAPiMF_01210_B CPSase_L_chain_B, 1 hit
InterProiView protein in InterPro
IPR011761 ATP-grasp
IPR006275 CarbamoylP_synth_lsu
IPR005480 CarbamoylP_synth_lsu_oligo
IPR036897 CarbamoylP_synth_lsu_oligo_sf
IPR005479 CbamoylP_synth_lsu-like_ATP-bd
IPR005483 CbamoylP_synth_lsu_CPSase_dom
IPR011607 MGS-like_dom
IPR036914 MGS-like_dom_sf
IPR033937 MGS_CPS_CarB
IPR016185 PreATP-grasp_dom_sf
PfamiView protein in Pfam
PF02786 CPSase_L_D2, 2 hits
PF02787 CPSase_L_D3, 1 hit
PF02142 MGS, 1 hit
PRINTSiPR00098 CPSASE
SMARTiView protein in SMART
SM01096 CPSase_L_D3, 1 hit
SM00851 MGS, 1 hit
SUPFAMiSSF48108 SSF48108, 1 hit
SSF52335 SSF52335, 1 hit
SSF52440 SSF52440, 2 hits
TIGRFAMsiTIGR01369 CPSaseII_lrg, 1 hit
PROSITEiView protein in PROSITE
PS50975 ATP_GRASP, 2 hits
PS00866 CPSASE_1, 2 hits
PS00867 CPSASE_2, 2 hits
PS51855 MGS, 1 hit

Sequencei

Sequence statusi: Complete.

A0JX72-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKRTDLKSV LVIGSGPIVI GQAAEFDYSG TQALRVLKEE GLRVILVNSN
60 70 80 90 100
PATIMTDPEF ADATYVEPIT PEVVEKIIAK ERPDAILPTL GGQTALNTAI
110 120 130 140 150
ALDKNGVLEK YNVELIGANI AAIELGEDRE KFKGVVERCG AESARSHIIH
160 170 180 190 200
SMDEALKAAE DLGYPMVVRP SFTMGGLGSG LAYTEDDLRR IVGQGLQYSP
210 220 230 240 250
TSEVLLEESI LGWKEYELEM MRDKNDNVVV VCSIENFDPV GVHTGDSITV
260 270 280 290 300
APALTLTDRE YQRLRDISIA VIREVGVDTG GCNIQFAVEP DTGRVVVIEM
310 320 330 340 350
NPRVSRSSAL ASKATGFAIA KIATKLSLGY TLDEIPNDIT QKTPASFEPT
360 370 380 390 400
LDYVVVKVPR FAFEKFPAAD PTLTTTMKSV GEAMAMGRNF TEALQKALRS
410 420 430 440 450
LEQKGSQLDF SHVPEWEVPE LIEKAKRPTT ERLHQVQRAL LGGATVEQLF
460 470 480 490 500
EATKIDPWYL DQLQLLNEIS HEIRKSTALT PEMLQRAKRH GFSDEQIGAL
510 520 530 540 550
TNNQEAVVRG VRQALGIRPV YKTVDTCAAE FAAYTPYHYS SYDEEDEVAL
560 570 580 590 600
HSKPSIIILG SGPNRIGQGI EFDYSCVHAS MALRKAGYET VMVNCNPETV
610 620 630 640 650
STDYDVSTRL YFEPLTLEDV LEVIAAEERT GGVMGVFVQL GGQTPLKLAQ
660 670 680 690 700
QLADAGVPIL GTSPEAIDLA EHRGAFSRVL DEAGLISPKN GTAVSFEDAK
710 720 730 740 750
KIADEIGYPV LVRPSYVLGG RGMEIVYDEP NLSRYIANAT EITTEHPVLI
760 770 780 790 800
DRFLEDAVEI DVDALYDGTE MYLGGIMEHI EEAGIHSGDS ACVLPPITLG
810 820 830 840 850
NNVIERVRTA TLAIAEGVGV RGLINIQFAL ASDVLYVLEA NPRASRTVPF
860 870 880 890 900
VSKATGVQMA KAAALIGTGV TINQLRSAYK MLPETGDGST LPFDAPVSVK
910 920 930 940 950
EAVLPFSRFR TPEGKVVDSL LGPEMRSTGE VMGIDKHFDT AFAKSQAAAN
960 970 980 990 1000
NALPTEGKIF VSVANRDKRS VIMGVKRLSD LGFEIVSTGG TADVLRRNGI
1010 1020 1030 1040 1050
QATPVRKVAE GSSAEGEGTI ADLIVAGEID MVFNTPSGGE ARIDGYELRA
1060 1070 1080 1090
AATSIGIPCI TTVAEFNAAV QAIEAQRTYE WSVTSLQEHA ENLKALQNG
Length:1,099
Mass (Da):118,840
Last modified:December 12, 2006 - v1
Checksum:i7BC99C4327E35E57
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000454 Genomic DNA Translation: ABK03642.1
RefSeqiWP_011692106.1, NC_008541.1

Genome annotation databases

EnsemblBacteriaiABK03642; ABK03642; Arth_2262
KEGGiart:Arth_2262

Similar proteinsi

Entry informationi

Entry nameiCARB_ARTS2
AccessioniPrimary (citable) accession number: A0JX72
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: December 12, 2006
Last modified: May 23, 2018
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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