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A0JUU8

- TRUB_ARTS2

UniProt

A0JUU8 - TRUB_ARTS2

Protein

tRNA pseudouridine synthase B

Gene

truB

Organism
Arthrobacter sp. (strain FB24)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (12 Dec 2006)
      Previous versions | rss
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    Functioni

    Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.UniRule annotation

    Catalytic activityi

    tRNA uridine(55) = tRNA pseudouridine(55).UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei39 – 391NucleophileUniRule annotation

    GO - Molecular functioni

    1. pseudouridine synthase activity Source: UniProtKB-HAMAP
    2. RNA binding Source: InterPro

    GO - Biological processi

    1. tRNA pseudouridine synthesis Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Isomerase

    Keywords - Biological processi

    tRNA processing

    Enzyme and pathway databases

    BioCyciASP290399:GHIF-1456-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    tRNA pseudouridine synthase BUniRule annotation (EC:5.4.99.25UniRule annotation)
    Alternative name(s):
    tRNA pseudouridine(55) synthaseUniRule annotation
    Short name:
    Psi55 synthaseUniRule annotation
    tRNA pseudouridylate synthaseUniRule annotation
    tRNA-uridine isomeraseUniRule annotation
    Gene namesi
    Name:truBUniRule annotation
    Ordered Locus Names:Arth_1424
    OrganismiArthrobacter sp. (strain FB24)
    Taxonomic identifieri290399 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrococcaceaeArthrobacter
    ProteomesiUP000000754: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 306306tRNA pseudouridine synthase BPRO_1000084544Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi290399.Arth_1424.

    Structurei

    3D structure databases

    ProteinModelPortaliA0JUU8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0130.
    HOGENOMiHOG000231225.
    KOiK03177.
    OMAiPKNISSA.
    OrthoDBiEOG6358D3.

    Family and domain databases

    HAMAPiMF_01080. TruB_bact.
    InterProiIPR002501. PsdUridine_synth.
    IPR020103. PsdUridine_synth_cat_dom.
    IPR015947. PUA-like_domain.
    IPR015225. tRNA_psdUridine_synth_fam2_C.
    IPR014780. tRNA_psdUridine_synth_TruB.
    [Graphical view]
    PANTHERiPTHR13767. PTHR13767. 1 hit.
    PfamiPF09142. TruB_C. 1 hit.
    PF01509. TruB_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    SSF88697. SSF88697. 1 hit.
    TIGRFAMsiTIGR00431. TruB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0JUU8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLSGLVIVDK PQGWTSHDVV GRMRRLAGTR KVGHAGTLDP MATGVLVLGI    50
    NKATRLLTYI VGTSKTYTAT IRLGESTVTD DAEGEVVSSH SAAAVTEGAI 100
    RAAVAALTGE IQQVPSSVSA IKVNGERAYA RVRSGEDVKL AARPVTIHRF 150
    DVHAVRPERA GAVLDVDVTV ECSSGTYIRA LARDLGEALG TGGHLTALRR 200
    TQVGPYTLDQ ARTLEQLAEE LEVLEMSQAA RALMPNRELS EDEATEISFG 250
    RRIAAGAGAG TPEAATADNP AAAFAPDGSL VALLADAGGY AKPVLVFAPS 300
    NEQPGK 306
    Length:306
    Mass (Da):31,873
    Last modified:December 12, 2006 - v1
    Checksum:i13BD2F21F300E941
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000454 Genomic DNA. Translation: ABK02818.1.
    RefSeqiWP_011691285.1. NC_008541.1.
    YP_830918.1. NC_008541.1.

    Genome annotation databases

    EnsemblBacteriaiABK02818; ABK02818; Arth_1424.
    GeneIDi4446060.
    KEGGiart:Arth_1424.
    PATRICi20998137. VBIArtSp72239_1778.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000454 Genomic DNA. Translation: ABK02818.1 .
    RefSeqi WP_011691285.1. NC_008541.1.
    YP_830918.1. NC_008541.1.

    3D structure databases

    ProteinModelPortali A0JUU8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 290399.Arth_1424.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABK02818 ; ABK02818 ; Arth_1424 .
    GeneIDi 4446060.
    KEGGi art:Arth_1424.
    PATRICi 20998137. VBIArtSp72239_1778.

    Phylogenomic databases

    eggNOGi COG0130.
    HOGENOMi HOG000231225.
    KOi K03177.
    OMAi PKNISSA.
    OrthoDBi EOG6358D3.

    Enzyme and pathway databases

    BioCyci ASP290399:GHIF-1456-MONOMER.

    Family and domain databases

    HAMAPi MF_01080. TruB_bact.
    InterProi IPR002501. PsdUridine_synth.
    IPR020103. PsdUridine_synth_cat_dom.
    IPR015947. PUA-like_domain.
    IPR015225. tRNA_psdUridine_synth_fam2_C.
    IPR014780. tRNA_psdUridine_synth_TruB.
    [Graphical view ]
    PANTHERi PTHR13767. PTHR13767. 1 hit.
    Pfami PF09142. TruB_C. 1 hit.
    PF01509. TruB_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    SSF88697. SSF88697. 1 hit.
    TIGRFAMsi TIGR00431. TruB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: FB24.

    Entry informationi

    Entry nameiTRUB_ARTS2
    AccessioniPrimary (citable) accession number: A0JUU8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 20, 2008
    Last sequence update: December 12, 2006
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3