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A0JUU8

- TRUB_ARTS2

UniProt

A0JUU8 - TRUB_ARTS2

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Protein
tRNA pseudouridine synthase B
Gene
truB, Arth_1424
Organism
Arthrobacter sp. (strain FB24)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs By similarity.UniRule annotation

Catalytic activityi

tRNA uridine(55) = tRNA pseudouridine(55).UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei39 – 391Nucleophile By similarity

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. pseudouridine synthase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. tRNA pseudouridine synthesis Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Biological processi

tRNA processing

Enzyme and pathway databases

BioCyciASP290399:GHIF-1456-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase B (EC:5.4.99.25)
Alternative name(s):
tRNA pseudouridine(55) synthase
Short name:
Psi55 synthase
tRNA pseudouridylate synthase
tRNA-uridine isomerase
Gene namesi
Name:truB
Ordered Locus Names:Arth_1424
OrganismiArthrobacter sp. (strain FB24)
Taxonomic identifieri290399 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrococcaceaeArthrobacter
ProteomesiUP000000754: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 306306tRNA pseudouridine synthase BUniRule annotation
PRO_1000084544Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi290399.Arth_1424.

Structurei

3D structure databases

ProteinModelPortaliA0JUU8.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0130.
HOGENOMiHOG000231225.
KOiK03177.
OMAiPKNISSA.
OrthoDBiEOG6358D3.

Family and domain databases

HAMAPiMF_01080. TruB_bact.
InterProiIPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR015947. PUA-like_domain.
IPR015225. tRNA_psdUridine_synth_fam2_C.
IPR014780. tRNA_psdUridine_synth_TruB.
[Graphical view]
PANTHERiPTHR13767. PTHR13767. 1 hit.
PfamiPF09142. TruB_C. 1 hit.
PF01509. TruB_N. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
SSF88697. SSF88697. 1 hit.
TIGRFAMsiTIGR00431. TruB. 1 hit.

Sequencei

Sequence statusi: Complete.

A0JUU8-1 [UniParc]FASTAAdd to Basket

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MLSGLVIVDK PQGWTSHDVV GRMRRLAGTR KVGHAGTLDP MATGVLVLGI    50
NKATRLLTYI VGTSKTYTAT IRLGESTVTD DAEGEVVSSH SAAAVTEGAI 100
RAAVAALTGE IQQVPSSVSA IKVNGERAYA RVRSGEDVKL AARPVTIHRF 150
DVHAVRPERA GAVLDVDVTV ECSSGTYIRA LARDLGEALG TGGHLTALRR 200
TQVGPYTLDQ ARTLEQLAEE LEVLEMSQAA RALMPNRELS EDEATEISFG 250
RRIAAGAGAG TPEAATADNP AAAFAPDGSL VALLADAGGY AKPVLVFAPS 300
NEQPGK 306
Length:306
Mass (Da):31,873
Last modified:December 12, 2006 - v1
Checksum:i13BD2F21F300E941
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000454 Genomic DNA. Translation: ABK02818.1.
RefSeqiWP_011691285.1. NC_008541.1.
YP_830918.1. NC_008541.1.

Genome annotation databases

EnsemblBacteriaiABK02818; ABK02818; Arth_1424.
GeneIDi4446060.
KEGGiart:Arth_1424.
PATRICi20998137. VBIArtSp72239_1778.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000454 Genomic DNA. Translation: ABK02818.1 .
RefSeqi WP_011691285.1. NC_008541.1.
YP_830918.1. NC_008541.1.

3D structure databases

ProteinModelPortali A0JUU8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 290399.Arth_1424.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK02818 ; ABK02818 ; Arth_1424 .
GeneIDi 4446060.
KEGGi art:Arth_1424.
PATRICi 20998137. VBIArtSp72239_1778.

Phylogenomic databases

eggNOGi COG0130.
HOGENOMi HOG000231225.
KOi K03177.
OMAi PKNISSA.
OrthoDBi EOG6358D3.

Enzyme and pathway databases

BioCyci ASP290399:GHIF-1456-MONOMER.

Family and domain databases

HAMAPi MF_01080. TruB_bact.
InterProi IPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR015947. PUA-like_domain.
IPR015225. tRNA_psdUridine_synth_fam2_C.
IPR014780. tRNA_psdUridine_synth_TruB.
[Graphical view ]
PANTHERi PTHR13767. PTHR13767. 1 hit.
Pfami PF09142. TruB_C. 1 hit.
PF01509. TruB_N. 1 hit.
[Graphical view ]
SUPFAMi SSF55120. SSF55120. 1 hit.
SSF88697. SSF88697. 1 hit.
TIGRFAMsi TIGR00431. TruB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FB24.

Entry informationi

Entry nameiTRUB_ARTS2
AccessioniPrimary (citable) accession number: A0JUU8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: December 12, 2006
Last modified: September 3, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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