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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase module

Gene

Arth_0294

Organism
Arthrobacter sp. (strain FB24)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP290399:GHIF-300-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Arth_0294Imported
OrganismiArthrobacter sp. (strain FB24)Imported
Taxonomic identifieri290399 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrococcaceaeArthrobacter
ProteomesiUP000000754 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi290399.Arth_0294.

Structurei

3D structure databases

ProteinModelPortaliA0JRM5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0JRM5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGSRERVRI QGRELVVTNL DKVMYPETGT TKADVLAYYT AVAPVLVPAA
60 70 80 90 100
VNRPATRKRW VNGVGTAEAP GEMFFQKNLE DSTPGWIPRA SIRHKERTNQ
110 120 130 140 150
YPLVNDAATL IWLAQMGSLE IHVPQWRVDP HGNPMNPDRL VLDLDPGEGA
160 170 180 190 200
GLAECAEVAR LARAILRDVG LDPIPVTSGS KGVHLYAGLD GTQSSDQISE
210 220 230 240 250
FAHELARALE SDHPDLAVSD MKKTLRTGKV LVDWSQNNAA KTTIVPYSLR
260 270 280 290 300
GRLRPTVAAP RTWRELASPK LKQLDYREVM RRVKDGKDPF APVSAGGSHV
310 320 330 340 350
RGHPGGGGSA AGPRDSTTAD GGSTDPRLEK YRSMRDPEGT PEPFSADRHG
360 370 380 390 400
ADPNAGTIRE RFVIQEHHAS RLHYDFRLER DGVLVSWALP KGVPTSGTQN
410 420 430 440 450
HLAVQTEDHP MDYLDFEGTI PKGQYGAGNV TIWDHGYYEC DKWIAGKEVI
460 470 480 490 500
ATLTGADGGG LGGTRKFALI RTSRDSDTSK SPEQAQWLIH LMDRKGHAPA
510 520 530 540 550
ATGTPPATGG PAEAAKQDEP PPDLSPAPDF LPMMASAGTP ADLRGLDWQF
560 570 580 590 600
ELKWDGIRAL IIGDADRIRL ISRNGNDMTA SYPELTDRSC WPEQSFTADG
610 620 630 640 650
EIVAVGPSGR PDFGLLQTRM KLTKAADVAK ARAATPVRLM VFDLLSDAGE
660 670 680 690 700
DLRRMPLRRR RARLEQLDWP DGCPVHLSEV LDHEVEHILE SARELGLEGI
710 720 730 740 750
MAKRLDGRYV SGERSRSWLK LKFERTQEVV VGGWRPGKGS RQGSVGSLLV
760 770 780 790 800
GIPDGAKLRY VGRVGSGFSD RELKELRLQV DTLSRKTSPF TEVPAADASD
810 820 830 840
AHWVAPGLVG EVTFGEWTGG GKLRHPVWRG WRLDKNADDV VAESG
Length:845
Mass (Da):92,365
Last modified:December 12, 2006 - v1
Checksum:i5FE4487128634C0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000454 Genomic DNA. Translation: ABK01695.1.
RefSeqiWP_011690165.1. NC_008541.1.
YP_829795.1. NC_008541.1.

Genome annotation databases

EnsemblBacteriaiABK01695; ABK01695; Arth_0294.
KEGGiart:Arth_0294.
PATRICi20995823. VBIArtSp72239_0643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000454 Genomic DNA. Translation: ABK01695.1.
RefSeqiWP_011690165.1. NC_008541.1.
YP_829795.1. NC_008541.1.

3D structure databases

ProteinModelPortaliA0JRM5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi290399.Arth_0294.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK01695; ABK01695; Arth_0294.
KEGGiart:Arth_0294.
PATRICi20995823. VBIArtSp72239_0643.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciASP290399:GHIF-300-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FB24Imported.

Entry informationi

Entry nameiA0JRM5_ARTS2
AccessioniPrimary (citable) accession number: A0JRM5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: May 27, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.