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A0JRM5

- A0JRM5_ARTS2

UniProt

A0JRM5 - A0JRM5_ARTS2

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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase module

Gene

Arth_0294

Organism
Arthrobacter sp. (strain FB24)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP290399:GHIF-300-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Arth_0294Imported
OrganismiArthrobacter sp. (strain FB24)Imported
Taxonomic identifieri290399 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrococcaceaeArthrobacter
ProteomesiUP000000754: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi290399.Arth_0294.

Structurei

3D structure databases

ProteinModelPortaliA0JRM5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0JRM5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGSRERVRI QGRELVVTNL DKVMYPETGT TKADVLAYYT AVAPVLVPAA
60 70 80 90 100
VNRPATRKRW VNGVGTAEAP GEMFFQKNLE DSTPGWIPRA SIRHKERTNQ
110 120 130 140 150
YPLVNDAATL IWLAQMGSLE IHVPQWRVDP HGNPMNPDRL VLDLDPGEGA
160 170 180 190 200
GLAECAEVAR LARAILRDVG LDPIPVTSGS KGVHLYAGLD GTQSSDQISE
210 220 230 240 250
FAHELARALE SDHPDLAVSD MKKTLRTGKV LVDWSQNNAA KTTIVPYSLR
260 270 280 290 300
GRLRPTVAAP RTWRELASPK LKQLDYREVM RRVKDGKDPF APVSAGGSHV
310 320 330 340 350
RGHPGGGGSA AGPRDSTTAD GGSTDPRLEK YRSMRDPEGT PEPFSADRHG
360 370 380 390 400
ADPNAGTIRE RFVIQEHHAS RLHYDFRLER DGVLVSWALP KGVPTSGTQN
410 420 430 440 450
HLAVQTEDHP MDYLDFEGTI PKGQYGAGNV TIWDHGYYEC DKWIAGKEVI
460 470 480 490 500
ATLTGADGGG LGGTRKFALI RTSRDSDTSK SPEQAQWLIH LMDRKGHAPA
510 520 530 540 550
ATGTPPATGG PAEAAKQDEP PPDLSPAPDF LPMMASAGTP ADLRGLDWQF
560 570 580 590 600
ELKWDGIRAL IIGDADRIRL ISRNGNDMTA SYPELTDRSC WPEQSFTADG
610 620 630 640 650
EIVAVGPSGR PDFGLLQTRM KLTKAADVAK ARAATPVRLM VFDLLSDAGE
660 670 680 690 700
DLRRMPLRRR RARLEQLDWP DGCPVHLSEV LDHEVEHILE SARELGLEGI
710 720 730 740 750
MAKRLDGRYV SGERSRSWLK LKFERTQEVV VGGWRPGKGS RQGSVGSLLV
760 770 780 790 800
GIPDGAKLRY VGRVGSGFSD RELKELRLQV DTLSRKTSPF TEVPAADASD
810 820 830 840
AHWVAPGLVG EVTFGEWTGG GKLRHPVWRG WRLDKNADDV VAESG
Length:845
Mass (Da):92,365
Last modified:December 12, 2006 - v1
Checksum:i5FE4487128634C0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000454 Genomic DNA. Translation: ABK01695.1.
RefSeqiWP_011690165.1. NC_008541.1.
YP_829795.1. NC_008541.1.

Genome annotation databases

EnsemblBacteriaiABK01695; ABK01695; Arth_0294.
GeneIDi4447228.
KEGGiart:Arth_0294.
PATRICi20995823. VBIArtSp72239_0643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000454 Genomic DNA. Translation: ABK01695.1 .
RefSeqi WP_011690165.1. NC_008541.1.
YP_829795.1. NC_008541.1.

3D structure databases

ProteinModelPortali A0JRM5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 290399.Arth_0294.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK01695 ; ABK01695 ; Arth_0294 .
GeneIDi 4447228.
KEGGi art:Arth_0294.
PATRICi 20995823. VBIArtSp72239_0643.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci ASP290399:GHIF-300-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FB24Imported.

Entry informationi

Entry nameiA0JRM5_ARTS2
AccessioniPrimary (citable) accession number: A0JRM5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: October 1, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3