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A0JRM5

- A0JRM5_ARTS2

UniProt

A0JRM5 - A0JRM5_ARTS2

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Protein
Submitted name: ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase module
Gene
Arth_0294
Organism
Arthrobacter sp. (strain FB24)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP290399:GHIF-300-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Arth_0294Imported
OrganismiArthrobacter sp. (strain FB24)Imported
Taxonomic identifieri290399 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrococcaceaeArthrobacter
ProteomesiUP000000754: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi290399.Arth_0294.

Structurei

3D structure databases

ProteinModelPortaliA0JRM5.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0JRM5-1 [UniParc]FASTAAdd to Basket

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MAGSRERVRI QGRELVVTNL DKVMYPETGT TKADVLAYYT AVAPVLVPAA    50
VNRPATRKRW VNGVGTAEAP GEMFFQKNLE DSTPGWIPRA SIRHKERTNQ 100
YPLVNDAATL IWLAQMGSLE IHVPQWRVDP HGNPMNPDRL VLDLDPGEGA 150
GLAECAEVAR LARAILRDVG LDPIPVTSGS KGVHLYAGLD GTQSSDQISE 200
FAHELARALE SDHPDLAVSD MKKTLRTGKV LVDWSQNNAA KTTIVPYSLR 250
GRLRPTVAAP RTWRELASPK LKQLDYREVM RRVKDGKDPF APVSAGGSHV 300
RGHPGGGGSA AGPRDSTTAD GGSTDPRLEK YRSMRDPEGT PEPFSADRHG 350
ADPNAGTIRE RFVIQEHHAS RLHYDFRLER DGVLVSWALP KGVPTSGTQN 400
HLAVQTEDHP MDYLDFEGTI PKGQYGAGNV TIWDHGYYEC DKWIAGKEVI 450
ATLTGADGGG LGGTRKFALI RTSRDSDTSK SPEQAQWLIH LMDRKGHAPA 500
ATGTPPATGG PAEAAKQDEP PPDLSPAPDF LPMMASAGTP ADLRGLDWQF 550
ELKWDGIRAL IIGDADRIRL ISRNGNDMTA SYPELTDRSC WPEQSFTADG 600
EIVAVGPSGR PDFGLLQTRM KLTKAADVAK ARAATPVRLM VFDLLSDAGE 650
DLRRMPLRRR RARLEQLDWP DGCPVHLSEV LDHEVEHILE SARELGLEGI 700
MAKRLDGRYV SGERSRSWLK LKFERTQEVV VGGWRPGKGS RQGSVGSLLV 750
GIPDGAKLRY VGRVGSGFSD RELKELRLQV DTLSRKTSPF TEVPAADASD 800
AHWVAPGLVG EVTFGEWTGG GKLRHPVWRG WRLDKNADDV VAESG 845
Length:845
Mass (Da):92,365
Last modified:December 12, 2006 - v1
Checksum:i5FE4487128634C0A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000454 Genomic DNA. Translation: ABK01695.1.
RefSeqiWP_011690165.1. NC_008541.1.
YP_829795.1. NC_008541.1.

Genome annotation databases

EnsemblBacteriaiABK01695; ABK01695; Arth_0294.
GeneIDi4447228.
KEGGiart:Arth_0294.
PATRICi20995823. VBIArtSp72239_0643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000454 Genomic DNA. Translation: ABK01695.1 .
RefSeqi WP_011690165.1. NC_008541.1.
YP_829795.1. NC_008541.1.

3D structure databases

ProteinModelPortali A0JRM5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 290399.Arth_0294.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK01695 ; ABK01695 ; Arth_0294 .
GeneIDi 4447228.
KEGGi art:Arth_0294.
PATRICi 20995823. VBIArtSp72239_0643.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci ASP290399:GHIF-300-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FB24Imported.

Entry informationi

Entry nameiA0JRM5_ARTS2
AccessioniPrimary (citable) accession number: A0JRM5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: September 3, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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