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A0JP82 (A0JP82_XENTR) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
LOC100036628 protein EMBL AAI27290.1
Gene names
Name:tet3 Xenbase XB-GENE-877084
Synonyms:LOC100036628 EMBL AAI27290.1
OrganismXenopus tropicalis (Western clawed frog) (Silurana tropicalis) EMBL AAI27290.1
Taxonomic identifier8364 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Amphibia › Batrachia › Anura › Pipoidea › Pipidae › Xenopodinae › Xenopus › Silurana

Protein attributes

Sequence length1901 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 4HP1 PDB 4HP3
Gene Ontology (GO)
   Molecular_functionDNA binding

Inferred from electronic annotation. Source: InterPro

zinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A0JP82 [UniParc].

Last modified December 12, 2006. Version 1.
Checksum: C74D3B847C920212

FASTA1,901210,426
        10         20         30         40         50         60 
MDTQPAPVPH VLPQDVYEFP DDQESLGRLR VSEMPAELNG GGGGGSAAAF AMELPEQSNK 

        70         80         90        100        110        120 
KRKRCGVCVP CLRKEPCGAC YNCVNRSTSH QICKMRKCEQ LKKKRVVPMK GVENCSESIL 

       130        140        150        160        170        180 
VDGPKTDQME AGPVNHVQEG RLKQECDSTL PSKGCEDLAN QLLMEANSWL SNTAAPQDPC 

       190        200        210        220        230        240 
NKLNWDKPTI PNHAANNNSN LEDAKNLVAF SAVAEAMSTY GMPASGTPSS VSLQLYEKFN 

       250        260        270        280        290        300 
YETNRDNSGH LEGNAPSCPE DLNTLKAALA LAKHGVKPPN CNCDGPECPD YLEWLENKIK 

       310        320        330        340        350        360 
STVKGSQESP FPNLGQVSKE LVQKQYPKEQ VLNLENKNST CPSGNLPFSQ NALSLAKEKN 

       370        380        390        400        410        420 
ISLQTAIAIE ALTQLSSALP QTNNECPNAP SQPLINPHDQ LTHFPSAKGN QLPMLPVARN 

       430        440        450        460        470        480 
ELFQNQQSQL YTGKNALPVP QSPRQTSWEQ NKKSSYQEGQ YIPENLSHSS SVLPSDASTP 

       490        500        510        520        530        540 
QKPEFLQQWV QNADLLKSPS DPMTGLKQLL GNTDEYIKSV FKGPEALPNK KNVKPKHTIK 

       550        560        570        580        590        600 
SIKKESTEFL KMSPDQQLSQ LLQTNEFHRN TQAALQQHLH HKRNLFVDPN AMEACTQEQQ 

       610        620        630        640        650        660 
NWWVPSSQQA PVSKTTEKPV KERKKRRQSP SQKQVEPKPK PQRKQVQIKK PKVKEGSAVF 

       670        680        690        700        710        720 
MPVSQISLDT FRRVEKEENQ GKEMDAENSL PNNVQTELLE SQSLQLTGSQ ANPDDRKTVN 

       730        740        750        760        770        780 
TQEMCNENQS NIGKANNFAL CVNRANSFVA KDQCPTPSTH DTSSSSGQGD SANQHTNVSD 

       790        800        810        820        830        840 
VPGQNDLSCL DDKLEDLIRQ FEAEFGEDFS LPGSAVPSQN GEGPPKQTPS GDPQFKLPFP 

       850        860        870        880        890        900 
SQLLPPENST KPATHSNPAL SNNPVSREVS NNLDSLFSSK SPKQIKIESS GAITVVSTTC 

       910        920        930        940        950        960 
FYSEENQHLD GTPTKSDLPF NPTLSGFLDS PLKYLTSPTK SLIDTPAKKA QAEFPTCDCV 

       970        980        990       1000       1010       1020 
EQINEKDEGP YYTHLGSGPT VASIRELMEE RFGQKGDAIR IEKVIYTGKE GKSSRGCPIA 

      1030       1040       1050       1060       1070       1080 
KWVIRRQSED EKLMCLVRQR AGHHCENAVI IILIMAWEGI PRSLGDSLYN DITETITKYG 

      1090       1100       1110       1120       1130       1140 
NPTSRRCGLN DDRTCACQGK DPNTCGASFS FGCSWSMYFN GCKYARSKTP RKFRLIGENP 

      1150       1160       1170       1180       1190       1200 
KEEDGLKDNF QNLATKVAPV YKMLAPQAYQ NQVNNEDIAI DCRLGLKEGR PFSGVTACMD 

      1210       1220       1230       1240       1250       1260 
FCAHAHKDQH NLYNGCTVVC TLTKEDNRMI GRVAEDEQLH VLPLYKVSTT DEFGSEEGQL 

      1270       1280       1290       1300       1310       1320 
EKIKKGGIHV LSSFPREVRK LSEPAKSCRQ RQLEAKKAAA EKKKLQKEKL VSPDKTKQEP 

      1330       1340       1350       1360       1370       1380 
SDKKTCQQNP GVPQQQTKPC IKVEPSNHYN NFKYNGNGVV ESYSVLGSCR PSDPYSMNSV 

      1390       1400       1410       1420       1430       1440 
YSYHSFYAQP NLPSVNGFHS KYALPPFGFY GFPNNPVVPN QFMNYGTSDA RNSGWMNNCF 

      1450       1460       1470       1480       1490       1500 
EKKPELQSLA DGMNQSYGSE LSEQSFRRSS EVPHHYSLQN PSSQKSVNVP HRTTPAPVET 

      1510       1520       1530       1540       1550       1560 
TPYSNLPCYN KVIKKEPGSD PLVDSFQRAN SVHSHSPGVN HSLQASDLPI SYKANGALSS 

      1570       1580       1590       1600       1610       1620 
SGRTNAESPC SMFMPNDKNG LEKKDYFGVH SNAPGLKDKQ WPPYGTDVSV RQHDSLDSQS 

      1630       1640       1650       1660       1670       1680 
PGKVWSSCKL SDSSAALPSS ASTQDKNWNG RQVSLNQGMK ESALFQEKLW NSVAASDRCS 

      1690       1700       1710       1720       1730       1740 
ATPSDRSSIT PCSELQDKNW GSFPNPTVNS LKTDSSQNHW DPYSLDDNMD DGQSKSVKEE 

      1750       1760       1770       1780       1790       1800 
DDEEIWSDSE HNFLDENIGG VAVAPGHGSI LIECARRELH ATTPLKKPNR CHPTRISLVF 

      1810       1820       1830       1840       1850       1860 
YQHKNLNQPN HGLALWEAKM KQLAERARAR EEEAAKLGIK QEVKSLGKKR KWGGAATTET 

      1870       1880       1890       1900 
PPVEKKDYTP TRQAATILTD SATTSFSYAY TKVTGPYSRF I

« Hide

References

« Hide 'large scale' references
[1]NIH - Xenopus Gene Collection (XGC) project
Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testes EMBL AAI27290.1.
[2]"Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus eye and neural development."
Xu Y., Xu C., Kato A., Tempel W., Abreu J.G., Bian C., Hu Y., Hu D., Zhao B., Cerovina T., Diao J., Wu F., He H.H., Cui Q., Clark E., Ma C., Barbara A., Veenstra G.J. expand/collapse author list , Xu G., Kaiser U.B., Liu X.S., Sugrue S.P., He X., Min J., Kato Y., Shi Y.G.
Cell 151:1200-1213(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 58-111.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC127289 mRNA. Translation: AAI27290.1.
RefSeqNP_001090656.1. NM_001097187.1.
UniGeneStr.53063.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4HP1X-ray2.25C58-111[»]
4HP3X-ray2.05C58-111[»]
ProteinModelPortalA0JP82.
ModBaseSearch...

Proteomic databases

PaxDbA0JP82.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID100036628.
KEGGxtr:100036628.

Organism-specific databases

CTD200424.
XenbaseXB-GENE-877084. tet3.

Phylogenomic databases

eggNOGNOG76473.
HOGENOMHOG000154550.
HOVERGENHBG079550.

Family and domain databases

InterProIPR024779. 2OGFeDO_nucleic_acid_mod.
IPR002857. Znf_CXXC.
[Graphical view]
PfamPF12851. Tet_JBP. 1 hit.
PF02008. zf-CXXC. 1 hit.
[Graphical view]
PROSITEPS51058. ZF_CXXC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA0JP82_XENTR
AccessionPrimary (citable) accession number: A0JP82
Entry history
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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