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A0JP82

- A0JP82_XENTR

UniProt

A0JP82 - A0JP82_XENTR

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Protein
Submitted name: LOC100036628 protein
Gene
tet3, LOC100036628
Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi65 – 651Zinc 1Imported
Metal bindingi68 – 681Zinc 1Imported
Metal bindingi71 – 711Zinc 1Imported
Metal bindingi77 – 771Zinc 2Imported
Metal bindingi80 – 801Zinc 2Imported
Metal bindingi83 – 831Zinc 2Imported
Metal bindingi93 – 931Zinc 2Imported
Metal bindingi98 – 981Zinc 1Imported

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-bindingImported, ZincImported

Names & Taxonomyi

Protein namesi
Submitted name:
LOC100036628 proteinImported
Gene namesi
Name:tet3Imported
Synonyms:LOC100036628Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana

Organism-specific databases

XenbaseiXB-GENE-877084. tet3.

PTM / Processingi

Proteomic databases

PaxDbiA0JP82.

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000026387.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HP1X-ray2.25C58-111[»]
4HP3X-ray2.05C58-111[»]
ProteinModelPortaliA0JP82.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG76473.
HOGENOMiHOG000154550.
HOVERGENiHBG079550.

Family and domain databases

InterProiIPR024779. 2OGFeDO_nucleic_acid_mod.
IPR002857. Znf_CXXC.
[Graphical view]
PfamiPF12851. Tet_JBP. 1 hit.
PF02008. zf-CXXC. 1 hit.
[Graphical view]
PROSITEiPS51058. ZF_CXXC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0JP82-1 [UniParc]FASTAAdd to Basket

« Hide

MDTQPAPVPH VLPQDVYEFP DDQESLGRLR VSEMPAELNG GGGGGSAAAF     50
AMELPEQSNK KRKRCGVCVP CLRKEPCGAC YNCVNRSTSH QICKMRKCEQ 100
LKKKRVVPMK GVENCSESIL VDGPKTDQME AGPVNHVQEG RLKQECDSTL 150
PSKGCEDLAN QLLMEANSWL SNTAAPQDPC NKLNWDKPTI PNHAANNNSN 200
LEDAKNLVAF SAVAEAMSTY GMPASGTPSS VSLQLYEKFN YETNRDNSGH 250
LEGNAPSCPE DLNTLKAALA LAKHGVKPPN CNCDGPECPD YLEWLENKIK 300
STVKGSQESP FPNLGQVSKE LVQKQYPKEQ VLNLENKNST CPSGNLPFSQ 350
NALSLAKEKN ISLQTAIAIE ALTQLSSALP QTNNECPNAP SQPLINPHDQ 400
LTHFPSAKGN QLPMLPVARN ELFQNQQSQL YTGKNALPVP QSPRQTSWEQ 450
NKKSSYQEGQ YIPENLSHSS SVLPSDASTP QKPEFLQQWV QNADLLKSPS 500
DPMTGLKQLL GNTDEYIKSV FKGPEALPNK KNVKPKHTIK SIKKESTEFL 550
KMSPDQQLSQ LLQTNEFHRN TQAALQQHLH HKRNLFVDPN AMEACTQEQQ 600
NWWVPSSQQA PVSKTTEKPV KERKKRRQSP SQKQVEPKPK PQRKQVQIKK 650
PKVKEGSAVF MPVSQISLDT FRRVEKEENQ GKEMDAENSL PNNVQTELLE 700
SQSLQLTGSQ ANPDDRKTVN TQEMCNENQS NIGKANNFAL CVNRANSFVA 750
KDQCPTPSTH DTSSSSGQGD SANQHTNVSD VPGQNDLSCL DDKLEDLIRQ 800
FEAEFGEDFS LPGSAVPSQN GEGPPKQTPS GDPQFKLPFP SQLLPPENST 850
KPATHSNPAL SNNPVSREVS NNLDSLFSSK SPKQIKIESS GAITVVSTTC 900
FYSEENQHLD GTPTKSDLPF NPTLSGFLDS PLKYLTSPTK SLIDTPAKKA 950
QAEFPTCDCV EQINEKDEGP YYTHLGSGPT VASIRELMEE RFGQKGDAIR 1000
IEKVIYTGKE GKSSRGCPIA KWVIRRQSED EKLMCLVRQR AGHHCENAVI 1050
IILIMAWEGI PRSLGDSLYN DITETITKYG NPTSRRCGLN DDRTCACQGK 1100
DPNTCGASFS FGCSWSMYFN GCKYARSKTP RKFRLIGENP KEEDGLKDNF 1150
QNLATKVAPV YKMLAPQAYQ NQVNNEDIAI DCRLGLKEGR PFSGVTACMD 1200
FCAHAHKDQH NLYNGCTVVC TLTKEDNRMI GRVAEDEQLH VLPLYKVSTT 1250
DEFGSEEGQL EKIKKGGIHV LSSFPREVRK LSEPAKSCRQ RQLEAKKAAA 1300
EKKKLQKEKL VSPDKTKQEP SDKKTCQQNP GVPQQQTKPC IKVEPSNHYN 1350
NFKYNGNGVV ESYSVLGSCR PSDPYSMNSV YSYHSFYAQP NLPSVNGFHS 1400
KYALPPFGFY GFPNNPVVPN QFMNYGTSDA RNSGWMNNCF EKKPELQSLA 1450
DGMNQSYGSE LSEQSFRRSS EVPHHYSLQN PSSQKSVNVP HRTTPAPVET 1500
TPYSNLPCYN KVIKKEPGSD PLVDSFQRAN SVHSHSPGVN HSLQASDLPI 1550
SYKANGALSS SGRTNAESPC SMFMPNDKNG LEKKDYFGVH SNAPGLKDKQ 1600
WPPYGTDVSV RQHDSLDSQS PGKVWSSCKL SDSSAALPSS ASTQDKNWNG 1650
RQVSLNQGMK ESALFQEKLW NSVAASDRCS ATPSDRSSIT PCSELQDKNW 1700
GSFPNPTVNS LKTDSSQNHW DPYSLDDNMD DGQSKSVKEE DDEEIWSDSE 1750
HNFLDENIGG VAVAPGHGSI LIECARRELH ATTPLKKPNR CHPTRISLVF 1800
YQHKNLNQPN HGLALWEAKM KQLAERARAR EEEAAKLGIK QEVKSLGKKR 1850
KWGGAATTET PPVEKKDYTP TRQAATILTD SATTSFSYAY TKVTGPYSRF 1900
I 1901
Length:1,901
Mass (Da):210,426
Last modified:December 12, 2006 - v1
Checksum:iC74D3B847C920212
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC127289 mRNA. Translation: AAI27290.1.
RefSeqiNP_001090656.1. NM_001097187.1.
UniGeneiStr.53063.

Genome annotation databases

GeneIDi100036628.
KEGGixtr:100036628.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC127289 mRNA. Translation: AAI27290.1 .
RefSeqi NP_001090656.1. NM_001097187.1.
UniGenei Str.53063.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4HP1 X-ray 2.25 C 58-111 [» ]
4HP3 X-ray 2.05 C 58-111 [» ]
ProteinModelPortali A0JP82.
ModBasei Search...

Protein-protein interaction databases

STRINGi 8364.ENSXETP00000026387.

Proteomic databases

PaxDbi A0JP82.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 100036628.
KEGGi xtr:100036628.

Organism-specific databases

CTDi 200424.
Xenbasei XB-GENE-877084. tet3.

Phylogenomic databases

eggNOGi NOG76473.
HOGENOMi HOG000154550.
HOVERGENi HBG079550.

Family and domain databases

InterProi IPR024779. 2OGFeDO_nucleic_acid_mod.
IPR002857. Znf_CXXC.
[Graphical view ]
Pfami PF12851. Tet_JBP. 1 hit.
PF02008. zf-CXXC. 1 hit.
[Graphical view ]
PROSITEi PS51058. ZF_CXXC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: TestesImported.
  2. "Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus eye and neural development."
    Xu Y., Xu C., Kato A., Tempel W., Abreu J.G., Bian C., Hu Y., Hu D., Zhao B., Cerovina T., Diao J., Wu F., He H.H., Cui Q., Clark E., Ma C., Barbara A., Veenstra G.J.
    , Xu G., Kaiser U.B., Liu X.S., Sugrue S.P., He X., Min J., Kato Y., Shi Y.G.
    Cell 151:1200-1213(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 58-111 IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiA0JP82_XENTR
AccessioniPrimary (citable) accession number: A0JP82
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: June 11, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3

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