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A0JNT1 (A0JNT1_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Pcdh11x protein EMBL AAI26931.1
Submitted name:
Protein Pcdh11x Ensembl ENSMUSP00000108991
Gene names
Name:Pcdh11x MGI 2442849 EMBL AAI26931.1 Ensembl ENSMUSP00000108991
OrganismMus musculus (Mouse) [Reference proteome] EMBL AAI26931.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length1128 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Biological processCell adhesion SAAS SAAS020894
   Cellular componentMembrane
   DomainRepeat SAAS SAAS020894
Transmembrane
Transmembrane helix SAAS SAAS020894
   LigandCalcium SAAS SAAS020894 RuleBase RU000484
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processhomophilic cell adhesion

Inferred from electronic annotation. Source: InterPro

   Cellular_componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncalcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A0JNT1 [UniParc].

Last modified December 12, 2006. Version 1.
Checksum: B099293C344066DA

FASTA1,128124,895
        10         20         30         40         50         60 
MDLLSGTYIF AVLLACVVFQ SGAQEKNYTV REEMPENVLI GDLLKDLNLS LIPDKSLTTP 

        70         80         90        100        110        120 
MQFKLVYKTG DVPLIRIEEG TGEIFTTGAR IDREKLCAGI VLDARCFYEV EVAVLPDEIF 

       130        140        150        160        170        180 
RLVKIRFLIE DINDNAPLFP TTVINISIPE NSAINSRYSL PAAIDPDIGI NGVQNYQLIK 

       190        200        210        220        230        240 
SQNIFGLDVI ETPEGDKMPQ LIVQKELDRE EKDTYVMKVK VEDGGFPQRS STAILQVSVA 

       250        260        270        280        290        300 
DTNDNHPIFI EKEIEVSIPE NAPIGSSVTQ LHATDADIGE NARIHFYFSN LVSNIAKRLF 

       310        320        330        340        350        360 
HLNTTTGLIT VKEPLDREES PSHKLLVLAT DGGSTPARAT VLVNVTDIND NVPSIDIRYI 

       370        380        390        400        410        420 
VNPTNGTVLL SENAPLNTKI ALITVMDKDS EHNGRVTCFT DHEVPFRLRP VFSNQFLLET 

       430        440        450        460        470        480 
AAFLDFESTR EYAIKLLAAD AGKPPLNQSS MLLIKVKDEN DNAPVFTQSF ISLSVPENNS 

       490        500        510        520        530        540 
PGAQLTKISA TDADSGQNAE ISYMLGFDAP PEFNLDQRTG ILTAVKKLDR EKQEKYYFTV 

       550        560        570        580        590        600 
LAQDNGIPPL MSNATVFVTV LDQNDNSPIF THNEYNFYVP ESLPKHGTVG LITVTDPDYG 

       610        620        630        640        650        660 
ENSAVTLSIL DVNDQFTIDP QSGVIRPNIS FDRERQESYT FYVKAEDGGR VSRSSTARVT 

       670        680        690        700        710        720 
INVVDVNDNK PIFIDPPSNY SFEWVLPSTN PGTVVFKVVA IDDDIGMNAE VLYSIVGGNT 

       730        740        750        760        770        780 
KGLFMIEQTS GNITLKEKCM VSDLGLHRVI VKANDLGQPD SLFNVVNVNF FINESVPNAT 

       790        800        810        820        830        840 
LIYELVRRSI DAPANQNTET TSASSPTTDY VKIMVAIVAG TITVVLVIFI TAVVRCRQPP 

       850        860        870        880        890        900 
HLKASQKNKQ NSEWVTPNPE NRQMIMMKKK KKKKKKHPPK NLLLNFVTIE EAKPDDGENE 

       910        920        930        940        950        960 
RNSVTLDLPI ELEEQTMGKY NWGTTPTTFK PDSPDLARHY KSASPQPAFQ IQPETPLNSK 

       970        980        990       1000       1010       1020 
HHIIQELPLD NTFVGCDSIS KCSSSSSDPY SVSECSYPVT TFKAPVSVHI RPTMKEVVRS 

      1030       1040       1050       1060       1070       1080 
HTPMKEATTV EIWTHPHPQS QRRVTFHLPE GSQESISDGG LGDHDAGSLP STSHALPLGY 

      1090       1100       1110       1120 
PQEEYFDHAA PNNRTEGDGN SDPESIPLHP SKTTASRSFH IHHTLLSN

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: PCR rescued clones EMBL AAI26931.1.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000108991.
[3]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000108991.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC115298 Genomic DNA. No translation available.
AC117258 Genomic DNA. No translation available.
BX005163 Genomic DNA. No translation available.
BX005240 Genomic DNA. No translation available.
BX005446 Genomic DNA. No translation available.
BX255884 Genomic DNA. No translation available.
BC126930 mRNA. Translation: AAI26931.1.
IPIIPI00875825.
UniGeneMm.39691.
Mm.422941.
Mm.490224.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000113364; ENSMUSP00000108991; ENSMUSG00000034755.
UCSCuc009ueg.1. mouse.

Organism-specific databases

MGIMGI:2442849. Pcdh11x.

Phylogenomic databases

eggNOGNOG145470.
GeneTreeENSGT00730000110367.
HOGENOMHOG000234535.
HOVERGENHBG053523.

Gene expression databases

GenevestigatorA0JNT1.

Family and domain databases

Gene3D2.60.40.60. 6 hits.
InterProIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR013585. Protocadherin.
[Graphical view]
PfamPF00028. Cadherin. 6 hits.
PF08266. Cadherin_2. 1 hit.
PF08374. Protocadherin. 1 hit.
[Graphical view]
PRINTSPR00205. CADHERIN.
SMARTSM00112. CA. 7 hits.
[Graphical view]
SUPFAMSSF49313. SSF49313. 6 hits.
PROSITEPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 7 hits.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSPCDH11X. mouse.
NextBio35542209.
SOURCESearch...

Entry information

Entry nameA0JNT1_MOUSE
AccessionPrimary (citable) accession number: A0JNT1
Entry history
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: November 13, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info