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A0JNT1

- A0JNT1_MOUSE

UniProt

A0JNT1 - A0JNT1_MOUSE

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Protein
Submitted name:

Pcdh11x protein

Gene

Pcdh11x

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. calcium ion binding Source: InterPro

GO - Biological processi

  1. homophilic cell adhesion via plasma membrane adhesion molecules Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Cell adhesionSAAS annotation

Keywords - Ligandi

CalciumUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Pcdh11x proteinImported
Submitted name:
Protein Pcdh11xImported
Gene namesi
Name:Pcdh11xImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:2442849. Pcdh11x.

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

GenevestigatoriA0JNT1.

Family & Domainsi

Keywords - Domaini

RepeatSAAS annotation, Transmembrane, Transmembrane helixSAAS annotation

Phylogenomic databases

eggNOGiNOG145470.
GeneTreeiENSGT00760000118822.
HOGENOMiHOG000234535.
HOVERGENiHBG053523.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR013585. Protocadherin.
[Graphical view]
PfamiPF00028. Cadherin. 6 hits.
PF08266. Cadherin_2. 1 hit.
PF08374. Protocadherin. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 7 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 7 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0JNT1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDLLSGTYIF AVLLACVVFQ SGAQEKNYTV REEMPENVLI GDLLKDLNLS
60 70 80 90 100
LIPDKSLTTP MQFKLVYKTG DVPLIRIEEG TGEIFTTGAR IDREKLCAGI
110 120 130 140 150
VLDARCFYEV EVAVLPDEIF RLVKIRFLIE DINDNAPLFP TTVINISIPE
160 170 180 190 200
NSAINSRYSL PAAIDPDIGI NGVQNYQLIK SQNIFGLDVI ETPEGDKMPQ
210 220 230 240 250
LIVQKELDRE EKDTYVMKVK VEDGGFPQRS STAILQVSVA DTNDNHPIFI
260 270 280 290 300
EKEIEVSIPE NAPIGSSVTQ LHATDADIGE NARIHFYFSN LVSNIAKRLF
310 320 330 340 350
HLNTTTGLIT VKEPLDREES PSHKLLVLAT DGGSTPARAT VLVNVTDIND
360 370 380 390 400
NVPSIDIRYI VNPTNGTVLL SENAPLNTKI ALITVMDKDS EHNGRVTCFT
410 420 430 440 450
DHEVPFRLRP VFSNQFLLET AAFLDFESTR EYAIKLLAAD AGKPPLNQSS
460 470 480 490 500
MLLIKVKDEN DNAPVFTQSF ISLSVPENNS PGAQLTKISA TDADSGQNAE
510 520 530 540 550
ISYMLGFDAP PEFNLDQRTG ILTAVKKLDR EKQEKYYFTV LAQDNGIPPL
560 570 580 590 600
MSNATVFVTV LDQNDNSPIF THNEYNFYVP ESLPKHGTVG LITVTDPDYG
610 620 630 640 650
ENSAVTLSIL DVNDQFTIDP QSGVIRPNIS FDRERQESYT FYVKAEDGGR
660 670 680 690 700
VSRSSTARVT INVVDVNDNK PIFIDPPSNY SFEWVLPSTN PGTVVFKVVA
710 720 730 740 750
IDDDIGMNAE VLYSIVGGNT KGLFMIEQTS GNITLKEKCM VSDLGLHRVI
760 770 780 790 800
VKANDLGQPD SLFNVVNVNF FINESVPNAT LIYELVRRSI DAPANQNTET
810 820 830 840 850
TSASSPTTDY VKIMVAIVAG TITVVLVIFI TAVVRCRQPP HLKASQKNKQ
860 870 880 890 900
NSEWVTPNPE NRQMIMMKKK KKKKKKHPPK NLLLNFVTIE EAKPDDGENE
910 920 930 940 950
RNSVTLDLPI ELEEQTMGKY NWGTTPTTFK PDSPDLARHY KSASPQPAFQ
960 970 980 990 1000
IQPETPLNSK HHIIQELPLD NTFVGCDSIS KCSSSSSDPY SVSECSYPVT
1010 1020 1030 1040 1050
TFKAPVSVHI RPTMKEVVRS HTPMKEATTV EIWTHPHPQS QRRVTFHLPE
1060 1070 1080 1090 1100
GSQESISDGG LGDHDAGSLP STSHALPLGY PQEEYFDHAA PNNRTEGDGN
1110 1120
SDPESIPLHP SKTTASRSFH IHHTLLSN
Length:1,128
Mass (Da):124,895
Last modified:December 12, 2006 - v1
Checksum:iB099293C344066DA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115298 Genomic DNA. No translation available.
AC117258 Genomic DNA. No translation available.
BX005163 Genomic DNA. No translation available.
BX005240 Genomic DNA. No translation available.
BX005446 Genomic DNA. No translation available.
BX255884 Genomic DNA. No translation available.
BC126930 mRNA. Translation: AAI26931.1.
UniGeneiMm.39691.
Mm.422941.
Mm.490224.

Genome annotation databases

EnsembliENSMUST00000113364; ENSMUSP00000108991; ENSMUSG00000034755.
UCSCiuc009ueg.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115298 Genomic DNA. No translation available.
AC117258 Genomic DNA. No translation available.
BX005163 Genomic DNA. No translation available.
BX005240 Genomic DNA. No translation available.
BX005446 Genomic DNA. No translation available.
BX255884 Genomic DNA. No translation available.
BC126930 mRNA. Translation: AAI26931.1 .
UniGenei Mm.39691.
Mm.422941.
Mm.490224.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000113364 ; ENSMUSP00000108991 ; ENSMUSG00000034755 .
UCSCi uc009ueg.1. mouse.

Organism-specific databases

MGIi MGI:2442849. Pcdh11x.

Phylogenomic databases

eggNOGi NOG145470.
GeneTreei ENSGT00760000118822.
HOGENOMi HOG000234535.
HOVERGENi HBG053523.

Miscellaneous databases

ChiTaRSi Pcdh11x. mouse.
NextBioi 35542209.
SOURCEi Search...

Gene expression databases

Genevestigatori A0JNT1.

Family and domain databases

Gene3Di 2.60.40.60. 6 hits.
InterProi IPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR013585. Protocadherin.
[Graphical view ]
Pfami PF00028. Cadherin. 6 hits.
PF08266. Cadherin_2. 1 hit.
PF08374. Protocadherin. 1 hit.
[Graphical view ]
PRINTSi PR00205. CADHERIN.
SMARTi SM00112. CA. 7 hits.
[Graphical view ]
SUPFAMi SSF49313. SSF49313. 6 hits.
PROSITEi PS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 7 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescued clonesImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA0JNT1_MOUSE
AccessioniPrimary (citable) accession number: A0JNT1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: November 26, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3