A0JNT1 (A0JNT1_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pcdh11x protein EMBL AAI26931.1

Submitted name:
Protein Pcdh11x Ensembl ENSMUSP00000108991

Gene names

Name:

Pcdh11x MGI 2442849 EMBL AAI26931.1 Ensembl ENSMUSP00000108991

Organism

Mus musculus (Mouse) [Reference proteome] EMBL AAI26931.1

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	1128 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Biological process	Cell adhesion SAAS SAAS013164
Cellular component	Membrane
Domain	Repeat SAAS SAAS013164 Transmembrane Transmembrane helix SAAS SAAS013164
Ligand	Calcium SAAS SAAS013164 RuleBase RU000484
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	homophilic cell adhesion Inferred from electronic annotation. Source: InterPro
Cellular_component	integral component of membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: InterPro
Molecular_function	calcium ion binding Inferred from electronic annotation. Source: InterPro protein binding Inferred from physical interaction PubMed 15905963. Source: MGI
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0JNT1 [UniParc]. Last modified December 12, 2006. Version 1. Checksum: B099293C344066DA	FASTA	1,128	124,895
	10 20 30 40 50 60 MDLLSGTYIF AVLLACVVFQ SGAQEKNYTV REEMPENVLI GDLLKDLNLS LIPDKSLTTP 70 80 90 100 110 120 MQFKLVYKTG DVPLIRIEEG TGEIFTTGAR IDREKLCAGI VLDARCFYEV EVAVLPDEIF 130 140 150 160 170 180 RLVKIRFLIE DINDNAPLFP TTVINISIPE NSAINSRYSL PAAIDPDIGI NGVQNYQLIK 190 200 210 220 230 240 SQNIFGLDVI ETPEGDKMPQ LIVQKELDRE EKDTYVMKVK VEDGGFPQRS STAILQVSVA 250 260 270 280 290 300 DTNDNHPIFI EKEIEVSIPE NAPIGSSVTQ LHATDADIGE NARIHFYFSN LVSNIAKRLF 310 320 330 340 350 360 HLNTTTGLIT VKEPLDREES PSHKLLVLAT DGGSTPARAT VLVNVTDIND NVPSIDIRYI 370 380 390 400 410 420 VNPTNGTVLL SENAPLNTKI ALITVMDKDS EHNGRVTCFT DHEVPFRLRP VFSNQFLLET 430 440 450 460 470 480 AAFLDFESTR EYAIKLLAAD AGKPPLNQSS MLLIKVKDEN DNAPVFTQSF ISLSVPENNS 490 500 510 520 530 540 PGAQLTKISA TDADSGQNAE ISYMLGFDAP PEFNLDQRTG ILTAVKKLDR EKQEKYYFTV 550 560 570 580 590 600 LAQDNGIPPL MSNATVFVTV LDQNDNSPIF THNEYNFYVP ESLPKHGTVG LITVTDPDYG 610 620 630 640 650 660 ENSAVTLSIL DVNDQFTIDP QSGVIRPNIS FDRERQESYT FYVKAEDGGR VSRSSTARVT 670 680 690 700 710 720 INVVDVNDNK PIFIDPPSNY SFEWVLPSTN PGTVVFKVVA IDDDIGMNAE VLYSIVGGNT 730 740 750 760 770 780 KGLFMIEQTS GNITLKEKCM VSDLGLHRVI VKANDLGQPD SLFNVVNVNF FINESVPNAT 790 800 810 820 830 840 LIYELVRRSI DAPANQNTET TSASSPTTDY VKIMVAIVAG TITVVLVIFI TAVVRCRQPP 850 860 870 880 890 900 HLKASQKNKQ NSEWVTPNPE NRQMIMMKKK KKKKKKHPPK NLLLNFVTIE EAKPDDGENE 910 920 930 940 950 960 RNSVTLDLPI ELEEQTMGKY NWGTTPTTFK PDSPDLARHY KSASPQPAFQ IQPETPLNSK 970 980 990 1000 1010 1020 HHIIQELPLD NTFVGCDSIS KCSSSSSDPY SVSECSYPVT TFKAPVSVHI RPTMKEVVRS 1030 1040 1050 1060 1070 1080 HTPMKEATTV EIWTHPHPQS QRRVTFHLPE GSQESISDGG LGDHDAGSLP STSHALPLGY 1090 1100 1110 1120 PQEEYFDHAA PNNRTEGDGN SDPESIPLHP SKTTASRSFH IHHTLLSN

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J. Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: PCR rescued clones EMBL AAI26931.1.
[2]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000108991.
[3]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000108991.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC115298 Genomic DNA. No translation available. AC117258 Genomic DNA. No translation available. BX005163 Genomic DNA. No translation available. BX005240 Genomic DNA. No translation available. BX005446 Genomic DNA. No translation available. BX255884 Genomic DNA. No translation available. BC126930 mRNA. Translation: AAI26931.1.
UniGene	Mm.39691. Mm.422941. Mm.490224.
3D structure databases
ModBase	Search...
MobiDB	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000113364; ENSMUSP00000108991; ENSMUSG00000034755.
UCSC	uc009ueg.1. mouse.
Organism-specific databases
MGI	MGI:2442849. Pcdh11x.
Phylogenomic databases
eggNOG	NOG145470.
GeneTree	ENSGT00730000110367.
HOGENOM	HOG000234535.
HOVERGEN	HBG053523.
Gene expression databases
Genevestigator	A0JNT1.
Family and domain databases
Gene3D	2.60.40.60. 6 hits.
InterPro	IPR002126. Cadherin. IPR015919. Cadherin-like. IPR020894. Cadherin_CS. IPR013164. Cadherin_N. IPR013585. Protocadherin. [Graphical view]
Pfam	PF00028. Cadherin. 6 hits. PF08266. Cadherin_2. 1 hit. PF08374. Protocadherin. 1 hit. [Graphical view]
PRINTS	PR00205. CADHERIN.
SMART	SM00112. CA. 7 hits. [Graphical view]
SUPFAM	SSF49313. SSF49313. 6 hits.
PROSITE	PS00232. CADHERIN_1. 5 hits. PS50268. CADHERIN_2. 7 hits. [Graphical view]
ProtoNet	Search...
Other
ChiTaRS	PCDH11X. mouse.
NextBio	35542209.
SOURCE	Search...

Entry information

Entry name

A0JNT1_MOUSE

Accession

Primary (citable) accession number: A0JNT1

Entry history

Integrated into UniProtKB/TrEMBL:	December 12, 2006
Last sequence update:	December 12, 2006
Last modified:	June 11, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)