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A0JNT1

- A0JNT1_MOUSE

UniProt

A0JNT1 - A0JNT1_MOUSE

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Protein
Submitted name: Pcdh11x protein
Gene
Pcdh11x
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
  2. protein binding Source: MGI

GO - Biological processi

  1. homophilic cell adhesion Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Cell adhesionSAAS annotations

Keywords - Ligandi

CalciumUniRule annotationSAAS annotations

Names & Taxonomyi

Protein namesi
Submitted name:
Pcdh11x proteinImported
Submitted name:
Protein Pcdh11xImported
Gene namesi
Name:Pcdh11xImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:2442849. Pcdh11x.

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

GenevestigatoriA0JNT1.

Family & Domainsi

Keywords - Domaini

RepeatSAAS annotations, Transmembrane, Transmembrane helixSAAS annotations

Phylogenomic databases

eggNOGiNOG145470.
GeneTreeiENSGT00730000110367.
HOGENOMiHOG000234535.
HOVERGENiHBG053523.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR013585. Protocadherin.
[Graphical view]
PfamiPF00028. Cadherin. 6 hits.
PF08266. Cadherin_2. 1 hit.
PF08374. Protocadherin. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 7 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 7 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0JNT1-1 [UniParc]FASTAAdd to Basket

« Hide

MDLLSGTYIF AVLLACVVFQ SGAQEKNYTV REEMPENVLI GDLLKDLNLS     50
LIPDKSLTTP MQFKLVYKTG DVPLIRIEEG TGEIFTTGAR IDREKLCAGI 100
VLDARCFYEV EVAVLPDEIF RLVKIRFLIE DINDNAPLFP TTVINISIPE 150
NSAINSRYSL PAAIDPDIGI NGVQNYQLIK SQNIFGLDVI ETPEGDKMPQ 200
LIVQKELDRE EKDTYVMKVK VEDGGFPQRS STAILQVSVA DTNDNHPIFI 250
EKEIEVSIPE NAPIGSSVTQ LHATDADIGE NARIHFYFSN LVSNIAKRLF 300
HLNTTTGLIT VKEPLDREES PSHKLLVLAT DGGSTPARAT VLVNVTDIND 350
NVPSIDIRYI VNPTNGTVLL SENAPLNTKI ALITVMDKDS EHNGRVTCFT 400
DHEVPFRLRP VFSNQFLLET AAFLDFESTR EYAIKLLAAD AGKPPLNQSS 450
MLLIKVKDEN DNAPVFTQSF ISLSVPENNS PGAQLTKISA TDADSGQNAE 500
ISYMLGFDAP PEFNLDQRTG ILTAVKKLDR EKQEKYYFTV LAQDNGIPPL 550
MSNATVFVTV LDQNDNSPIF THNEYNFYVP ESLPKHGTVG LITVTDPDYG 600
ENSAVTLSIL DVNDQFTIDP QSGVIRPNIS FDRERQESYT FYVKAEDGGR 650
VSRSSTARVT INVVDVNDNK PIFIDPPSNY SFEWVLPSTN PGTVVFKVVA 700
IDDDIGMNAE VLYSIVGGNT KGLFMIEQTS GNITLKEKCM VSDLGLHRVI 750
VKANDLGQPD SLFNVVNVNF FINESVPNAT LIYELVRRSI DAPANQNTET 800
TSASSPTTDY VKIMVAIVAG TITVVLVIFI TAVVRCRQPP HLKASQKNKQ 850
NSEWVTPNPE NRQMIMMKKK KKKKKKHPPK NLLLNFVTIE EAKPDDGENE 900
RNSVTLDLPI ELEEQTMGKY NWGTTPTTFK PDSPDLARHY KSASPQPAFQ 950
IQPETPLNSK HHIIQELPLD NTFVGCDSIS KCSSSSSDPY SVSECSYPVT 1000
TFKAPVSVHI RPTMKEVVRS HTPMKEATTV EIWTHPHPQS QRRVTFHLPE 1050
GSQESISDGG LGDHDAGSLP STSHALPLGY PQEEYFDHAA PNNRTEGDGN 1100
SDPESIPLHP SKTTASRSFH IHHTLLSN 1128
Length:1,128
Mass (Da):124,895
Last modified:December 12, 2006 - v1
Checksum:iB099293C344066DA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC115298 Genomic DNA. No translation available.
AC117258 Genomic DNA. No translation available.
BX005163 Genomic DNA. No translation available.
BX005240 Genomic DNA. No translation available.
BX005446 Genomic DNA. No translation available.
BX255884 Genomic DNA. No translation available.
BC126930 mRNA. Translation: AAI26931.1.
UniGeneiMm.39691.
Mm.422941.
Mm.490224.

Genome annotation databases

EnsembliENSMUST00000113364; ENSMUSP00000108991; ENSMUSG00000034755.
UCSCiuc009ueg.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC115298 Genomic DNA. No translation available.
AC117258 Genomic DNA. No translation available.
BX005163 Genomic DNA. No translation available.
BX005240 Genomic DNA. No translation available.
BX005446 Genomic DNA. No translation available.
BX255884 Genomic DNA. No translation available.
BC126930 mRNA. Translation: AAI26931.1 .
UniGenei Mm.39691.
Mm.422941.
Mm.490224.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000113364 ; ENSMUSP00000108991 ; ENSMUSG00000034755 .
UCSCi uc009ueg.1. mouse.

Organism-specific databases

MGIi MGI:2442849. Pcdh11x.

Phylogenomic databases

eggNOGi NOG145470.
GeneTreei ENSGT00730000110367.
HOGENOMi HOG000234535.
HOVERGENi HBG053523.

Miscellaneous databases

ChiTaRSi PCDH11X. mouse.
NextBioi 35542209.
SOURCEi Search...

Gene expression databases

Genevestigatori A0JNT1.

Family and domain databases

Gene3Di 2.60.40.60. 6 hits.
InterProi IPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR013585. Protocadherin.
[Graphical view ]
Pfami PF00028. Cadherin. 6 hits.
PF08266. Cadherin_2. 1 hit.
PF08374. Protocadherin. 1 hit.
[Graphical view ]
PRINTSi PR00205. CADHERIN.
SMARTi SM00112. CA. 7 hits.
[Graphical view ]
SUPFAMi SSF49313. SSF49313. 6 hits.
PROSITEi PS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 7 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescued clonesImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA0JNT1_MOUSE
AccessioniPrimary (citable) accession number: A0JNT1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: June 11, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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