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A0JMM3 (A0JMM3_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length402 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionexo-alpha-sialidase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A0JMM3 [UniParc].

Last modified December 12, 2006. Version 1.
Checksum: AF2867F30357419E

FASTA40245,094
        10         20         30         40         50         60 
MGNKTPSKSK SGYPKEMNTT TVFKQEQPQT WCCCFKKQVS YRIPALVYVS DEQTFLAFAE 

        70         80         90        100        110        120 
KRKTLNDTNA EVLVMRRGTW VDAKTKEVEW ICGHQVLSSA SLPNHRSMNP CPVYERDSKT 

       130        140        150        160        170        180 
LFLFFVCVPT QVSEFDQIRT NKSQGRLCYV TSKDAGKTWS QTIDLTADVI GEQVNEWAPF 

       190        200        210        220        230        240 
AVGPGHGVQT KNGRLIIPAY AYRYTGKTDC TSCCCLSFCC FTPYALAFYS DDQGITWKAG 

       250        260        270        280        290        300 
QQMDVESCEC QMAEIVGEKG DSTLYCNART RLGYRTEALS NNAGEDFDTV LSSSKLIETG 

       310        320        330        340        350        360 
KGCQGSVLSF VEQSSPPQTW LLYSHPSHPK KRVDLGLYLN KSPLDSSGWS DEPLMILHHG 

       370        380        390        400 
PSAYSDLVEF EPGHFACLME CGKEHENEEI AFLLFKLPEK KL 

« Hide

References

« Hide 'large scale' references
[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Whole EMBL AAI25932.1.
[2]"Molecular cloning and biochemical characterization of sialidases from zebrafish (Danio rerio)."
Manzoni M., Colombi P., Papini N., Rubaga L., Tiso N., Preti A., Venerando B., Tettamanti G., Bresciani R., Argenton F., Borsani G., Monti E.
Biochem. J. 408:395-406(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: PCR rescue EMBL AAI64496.1.
[4]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000075627 Ensembl ENSDARP00000079035.
[5]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000075627 Ensembl ENSDARP00000079035.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU928016 Genomic DNA. No translation available.
BC125931 mRNA. Translation: AAI25932.1.
BC164496 mRNA. Translation: AAI64496.1.
EF107698 mRNA. Translation: ABO30989.1.
RefSeqNP_001071006.1. NM_001077538.1.
XP_005161237.1. XM_005161180.1.
XP_005161238.1. XM_005161181.1.
XP_005161239.1. XM_005161182.1.
UniGeneDr.91877.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein family/group databases

CAZyGH33. Glycoside Hydrolase Family 33.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000081184; ENSDARP00000075627; ENSDARG00000058327.
ENSDART00000084600; ENSDARP00000079035; ENSDARG00000058327.
GeneID555206.
KEGGdre:555206.

Organism-specific databases

CTD555206.
ZFINZDB-GENE-061103-511. neu3.3.

Phylogenomic databases

eggNOGNOG84455.
GeneTreeENSGT00390000011171.
HOGENOMHOG000233778.
HOVERGENHBG052608.
InParanoidA0JMM3.
KOK12357.
OMAQPENANT.
OrthoDBEOG7MSMNP.
TreeFamTF331063.

Family and domain databases

Gene3D2.120.10.10. 1 hit.
InterProIPR026944. Sialidase-3.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERPTHR10628. PTHR10628. 1 hit.
PTHR10628:SF7. PTHR10628:SF7. 1 hit.
SUPFAMSSF50939. SSF50939. 1 hit.
ProtoNetSearch...

Other

NextBio20880852.

Entry information

Entry nameA0JMM3_DANRE
AccessionPrimary (citable) accession number: A0JMM3
Entry history
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: April 16, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)