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Protein
Submitted name:

SF3B1 protein

Gene

SF3B1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
SF3B1 proteinImported
Gene namesi
Name:SF3B1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA35686.

PTM / Processingi

Proteomic databases

PaxDbiA0JLT9.
PeptideAtlasiA0JLT9.
PRIDEiA0JLT9.

Expressioni

Gene expression databases

GenevisibleiA0JLT9. HS.

Interactioni

Protein-protein interaction databases

IntActiA0JLT9. 1 interactor.
STRINGi9606.ENSP00000335321.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini329 – 451SF3b1InterPro annotationAdd BLAST123

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili1 – 28Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0213. Eukaryota.
COG5181. LUCA.
HOVERGENiHBG086792.

Family and domain databases

InterProiIPR015016. SF3b_su1.
[Graphical view]
PfamiPF08920. SF3b1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

A0JLT9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKIAKTHED IEAQIREIQG KKAALDEAQG VGLDSTGYYD QEIYGGSDSR
60 70 80 90 100
FAGYVTSIAA TELEDDDDDY SSSTSLLGQK KPGYHAPVAL LNDIPQSTEQ
110 120 130 140 150
YDPFAEHRPP KIADREDEYK KHRRTMIISP ERLDPFADGG KTPDPKMNAR
160 170 180 190 200
TYMDVMREQH LTKEEREIRQ QLAEKAKAGE LKVVNGAAAS QPPSKRKRRW
210 220 230 240 250
DQTADQTPGA TPKKLSSWDQ AETPGHTPSL RWDETPGRAK GSETPGATPG
260 270 280 290 300
SKIWDPTPSH TPAGAATPGR GDTPGHATPG HGGATSSARK NRWDETPKTE
310 320 330 340 350
RDTPGHGSGW AETPRTDRGG DSIGETPTPG ASKRKSRWDE TPASQMGGST
360 370 380 390 400
PVLTPGKTPI GTPAMNMATP TPGHIMSMTP EQLQAWRWER EIDERNRPLS
410 420 430 440 450
DEELDAMFPE GYKVLPPPAG YVPIRTPARK LTATPTPLGG MTGFHMQTED
460 470 480 490
RTMKSVNDQP SGNLPFLKPD DIQYFDKLLV DVDESTLSPE EQKKKK
Length:496
Mass (Da):54,404
Last modified:December 12, 2006 - v1
Checksum:iE42B3AA4324B5326
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei496Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC015530 mRNA. Translation: AAH15530.1.
UniGeneiHs.632554.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC015530 mRNA. Translation: AAH15530.1.
UniGeneiHs.632554.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA0JLT9. 1 interactor.
STRINGi9606.ENSP00000335321.

Proteomic databases

PaxDbiA0JLT9.
PeptideAtlasiA0JLT9.
PRIDEiA0JLT9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

PharmGKBiPA35686.

Phylogenomic databases

eggNOGiKOG0213. Eukaryota.
COG5181. LUCA.
HOVERGENiHBG086792.

Miscellaneous databases

ChiTaRSiSF3B1. human.

Gene expression databases

GenevisibleiA0JLT9. HS.

Family and domain databases

InterProiIPR015016. SF3b_su1.
[Graphical view]
PfamiPF08920. SF3b1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA0JLT9_HUMAN
AccessioniPrimary (citable) accession number: A0JLT9
Entry historyi
Integrated into UniProtKB/TrEMBL: December 12, 2006
Last sequence update: December 12, 2006
Last modified: September 7, 2016
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.