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Protein
Submitted name:

Chromosome undetermined scaffold_9, whole genome shotgun sequence

Gene

GSPATT00004177001

Organism
Paramecium tetraurelia
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. double-strand break repair via homologous recombination Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Chromosome undetermined scaffold_9, whole genome shotgun sequenceImported
Gene namesi
ORF Names:GSPATT00004177001Imported
OrganismiParamecium tetraureliaImported
Taxonomic identifieri5888 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaPeniculidaParameciidaeParamecium
ProteomesiUP000000600 Componenti: Partially assembled WGS sequence

Family & Domainsi

Phylogenomic databases

InParanoidiA0EDE1.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR015187. BRCA2_OB_1.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF09103. BRCA-2_OB1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

A0EDE1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MISGFQTGRN QKIQLVENEK CNKIVIQFED LSEEEEVYKS DNKPTKNDLN
60 70 80 90 100
LLNSLSKEAI KINNQLYHPS KFAEQDFKFM SKNPRDSLSE KKISYQTVIM
110 120 130 140 150
ADEIQKEIIT PIKKKEPNTN NEIFQMNTIL LSKISKLPKC LIGEKFYELS
160 170 180 190 200
KQFMKNSQLK FSSFSRLQKI PQEFDWKLIK EYFKQYDAEK DWLYEQAKLV
210 220 230 240 250
FWKLQSKNNY TDQKLILELE YRYFIQYRLQ SRTIIQEIWT NDQSLNQHMI
260 270 280 290 300
LLVVAIEQYQ GKRILELSDG WYSIFFICEQ SYEQIYNKIK IGQKLHLTNL
310 320 330 340 350
KEYPIIFNTS NVKIITQYPF TKMMVTTKIN SIKKAQLNTK LGRQQQKFFL
360 370 380 390 400
RSLKSLRNGT IPCIDVFIVS KSYLININQK NQRKAIQFNS ETENEEEIQK
410 420 430 440 450
LKNSNLCFWI TVMDSLNYFD ERKSKITELK EILVYINDPL QYEMISVGQR
460 470 480 490 500
VQIINAIQFN SDISVKLTKS SGILFELQQY QDYFNKLQIL SNRHEIQIKV
510 520 530 540 550
NNHIKLEQMD VIEGSNDQHQ SVKIEIQNSF FGEILKDQQM KILKVTQLNK
560 570
INNERFQTTQ MSKLINIINY NK
Length:572
Mass (Da):68,047
Last modified:November 28, 2006 - v1
Checksum:iD3489C7B50771F02
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868671 Genomic DNA. Translation: CAK93308.1.
RefSeqiXP_001460705.1. XM_001460668.1.

Genome annotation databases

EnsemblProtistsiCAK93308; CAK93308; GSPATT00004177001.
GeneIDi5046490.
KEGGiptm:GSPATT00004177001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868671 Genomic DNA. Translation: CAK93308.1.
RefSeqiXP_001460705.1. XM_001460668.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiCAK93308; CAK93308; GSPATT00004177001.
GeneIDi5046490.
KEGGiptm:GSPATT00004177001.

Phylogenomic databases

InParanoidiA0EDE1.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR015187. BRCA2_OB_1.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF09103. BRCA-2_OB1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Stock d4-2Imported.

Entry informationi

Entry nameiA0EDE1_PARTE
AccessioniPrimary (citable) accession number: A0EDE1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: January 7, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.