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Protein
Submitted name:

Chromosome undetermined scaffold_89, whole genome shotgun sequence

Gene

GSPATT00025612001

Organism
Paramecium tetraurelia
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Chromosome undetermined scaffold_89, whole genome shotgun sequenceImported
Gene namesi
ORF Names:GSPATT00025612001Imported
OrganismiParamecium tetraureliaImported
Taxonomic identifieri5888 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaPeniculidaParameciidaeParamecium
ProteomesiUP000000600: Partially assembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliA0EC59.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiA0EC59.
KOiK01971.

Family and domain databases

Gene3Di2.20.140.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR008893. WGR_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
PF05406. WGR. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0EC59-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MKKYLQCDSK FWSITIEEND ETKLFIRYGN LCDYEELNVK KVEKQFPSKE
60 70 80 90 100
ECQKYCEEAS KTKEDKGYQE VVPGQQIQQQ IQKNDSPIQN RPVQTKQQQK
110 120 130 140 150
QSNAIKRTGS LKPDTIAAIT DDALNGRQQA IKGPAVDLGK GTIPLGKVML
160 170 180 190 200
AQTWNEEIDP KGYYLSEKLD GMRMIWTGSK MYSRNGNPIQ FPDFFVQGWP
210 220 230 240 250
KSYLDGELWL ERDQFSKLVS ITKRQVPVED DWRKVKYMVF DAPGLKLPFK
260 270 280 290 300
DRYLRFKQAC EQANQYIVYV PHIVCKGYDH LIDELEAVQD LEGEGLMLRD
310 320 330 340 350
PDSTYEQRRS DKLLKVKTFM DDEATVLAHE EGTGRCQGML GSLKVKNTSG
360 370 380 390
IVFNIGSGLT DDIRQKPPKI GSRITYKYYG VSKNNVPRFP IYLRERPKE
Length:399
Mass (Da):46,077
Last modified:November 28, 2006 - v1
Checksum:iB841A16EAC849173
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868670 Genomic DNA. Translation: CAK92876.1.
RefSeqiXP_001460273.1. XM_001460236.1.

Genome annotation databases

EnsemblProtistsiCAK92876; CAK92876; GSPATT00025612001.
GeneIDi5046058.
KEGGiptm:GSPATT00025612001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868670 Genomic DNA. Translation: CAK92876.1.
RefSeqiXP_001460273.1. XM_001460236.1.

3D structure databases

ProteinModelPortaliA0EC59.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiCAK92876; CAK92876; GSPATT00025612001.
GeneIDi5046058.
KEGGiptm:GSPATT00025612001.

Phylogenomic databases

InParanoidiA0EC59.
KOiK01971.

Family and domain databases

Gene3Di2.20.140.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR008893. WGR_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
PF05406. WGR. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Stock d4-2Imported.

Entry informationi

Entry nameiA0EC59_PARTE
AccessioniPrimary (citable) accession number: A0EC59
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: January 7, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.