A0EA99 (A0EA99_PARTE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Chromosome undetermined scaffold_86, whole genome shotgun sequence EMBL CAK92216.1

Gene names

ORF Names:

GSPATT00024948001 EMBL CAK92216.1

Organism

Paramecium tetraurelia [Reference proteome]

Taxonomic identifier

5888 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Alveolata › Ciliophora › Intramacronucleata › Oligohymenophorea › Peniculida › Parameciidae › Paramecium

Protein attributes

Sequence length	680 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro DNA replication Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A0EA99 [UniParc]. Last modified November 28, 2006. Version 1. Checksum: E1CB7825FDEB2625	FASTA	680	78,311
	10 20 30 40 50 60 MQKTIASFFK SSKKGDDSND QIKEQQFIEE NLKKEKLMPE QKVCASKSKS HNMEIKGAVL 70 80 90 100 110 120 FIDMAELYEQ VGEIKGQNSK DAIKELVAKL FIRIMKENRE EFVPAYLFSI LKLGPDYESW 130 140 150 160 170 180 ELGIGQGIIV KSISAVSGKS EKQVRELMNT LGDLGLAIEK SKSTQTSLNK FFVSQSVKEE 190 200 210 220 230 240 VKLTMIQVFN TLQQLQKQEG TGSSLEKERI LTGLLRMAKP IEAKYIIRFI EKNLKIGAAE 250 260 270 280 290 300 KTMQAALARA FQLYHKGNVE GDYESIINQA LCECPNYKKI IDTLFSIQSL KEVPELCHII 310 320 330 340 350 360 PGVPCKPMLA KPMKSIQMIF QRFENMKFTC EYKYDGLRGQ IHFENGQVSI FSRNLENMTQ 370 380 390 400 410 420 TYPDIVNYVH THYQHLDGFI IDSEIVAYDV ANNRILPFQT LTSRAKKNVD QNQIEIQVCL 430 440 450 460 470 480 YIFDLLYLNK QSYLKETLEK RRQTLRETFK EEEGKLKFAT SRDSENFEEI EEFLLNSIKM 490 500 510 520 530 540 GCEGLMIKTL EINSQYEPAK RSFNWLKLKK DYLDNGLSDT FDLVPIGACY GTGKRKGFYG 550 560 570 580 590 600 SYLLACYNED MDQYETTCKI GTGFSDENLE KFFQFFQEYL IPHPLSEYKC DGVNMDVWFS 610 620 630 640 650 660 PVVVWEIKSA DIQISPIYSA CSTILQLNNK GVGLRFPRLI KVREDKKPNE ATSSQFLYDV 670 680 YKQQAVVASN NTFEQDDDFY

References

[1]

"Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia." Genoscope Aury J.-M., Jaillon O., Duret L., Noel B., Jubin C., Porcel B.M., Segurens B., Daubin V., Anthouard V., Aiach N., Arnaiz O., Billaut A., Beisson J., Blanc I., Bouhouche K., Camara F., Duharcourt S., Guigo R. , Gogendeau D., Katinka M., Keller A.-M., Kissmehl R., Klotz C., Koll F., Le Mouel A., Lepere G., Malinsky S., Nowacki M., Nowak J.K., Plattner H., Poulain J., Ruiz F., Serrano V., Zagulski M., Dessen P., Betermier M., Weissenbach J., Scarpelli C., Schaechter V., Sperling L., Meyer E., Cohen J., Wincker P. Nature 444:171-178(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Stock d4-2 EMBL CAK92216.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT868667 Genomic DNA. Translation: CAK92216.1.
RefSeq	XP_001459613.1. XM_001459576.1.
3D structure databases
ProteinModelPortal	A0EA99.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5045391.
KEGG	ptm:GSPATT00024948001.
Phylogenomic databases
KO	K10747.
ProtClustDB	CLSZ2445969.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A0EA99_PARTE

Accession

Primary (citable) accession number: A0EA99

Entry history

Integrated into UniProtKB/TrEMBL:	November 28, 2006
Last sequence update:	November 28, 2006
Last modified:	March 6, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)