Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Chromosome undetermined scaffold_86, whole genome shotgun sequence

Gene

GSPATT00024948001

Organism
Paramecium tetraurelia
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Chromosome undetermined scaffold_86, whole genome shotgun sequenceImported
Gene namesi
ORF Names:GSPATT00024948001Imported
OrganismiParamecium tetraureliaImported
Taxonomic identifieri5888 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaPeniculidaParameciidaeParamecium
ProteomesiUP000000600 Componenti: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi412030.XP_001459613.1.

Structurei

3D structure databases

ProteinModelPortaliA0EA99.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiA0EA99.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0EA99-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKTIASFFK SSKKGDDSND QIKEQQFIEE NLKKEKLMPE QKVCASKSKS
60 70 80 90 100
HNMEIKGAVL FIDMAELYEQ VGEIKGQNSK DAIKELVAKL FIRIMKENRE
110 120 130 140 150
EFVPAYLFSI LKLGPDYESW ELGIGQGIIV KSISAVSGKS EKQVRELMNT
160 170 180 190 200
LGDLGLAIEK SKSTQTSLNK FFVSQSVKEE VKLTMIQVFN TLQQLQKQEG
210 220 230 240 250
TGSSLEKERI LTGLLRMAKP IEAKYIIRFI EKNLKIGAAE KTMQAALARA
260 270 280 290 300
FQLYHKGNVE GDYESIINQA LCECPNYKKI IDTLFSIQSL KEVPELCHII
310 320 330 340 350
PGVPCKPMLA KPMKSIQMIF QRFENMKFTC EYKYDGLRGQ IHFENGQVSI
360 370 380 390 400
FSRNLENMTQ TYPDIVNYVH THYQHLDGFI IDSEIVAYDV ANNRILPFQT
410 420 430 440 450
LTSRAKKNVD QNQIEIQVCL YIFDLLYLNK QSYLKETLEK RRQTLRETFK
460 470 480 490 500
EEEGKLKFAT SRDSENFEEI EEFLLNSIKM GCEGLMIKTL EINSQYEPAK
510 520 530 540 550
RSFNWLKLKK DYLDNGLSDT FDLVPIGACY GTGKRKGFYG SYLLACYNED
560 570 580 590 600
MDQYETTCKI GTGFSDENLE KFFQFFQEYL IPHPLSEYKC DGVNMDVWFS
610 620 630 640 650
PVVVWEIKSA DIQISPIYSA CSTILQLNNK GVGLRFPRLI KVREDKKPNE
660 670 680
ATSSQFLYDV YKQQAVVASN NTFEQDDDFY
Length:680
Mass (Da):78,311
Last modified:November 28, 2006 - v1
Checksum:iE1CB7825FDEB2625
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868667 Genomic DNA. Translation: CAK92216.1.
RefSeqiXP_001459613.1. XM_001459576.1.

Genome annotation databases

EnsemblProtistsiCAK92216; CAK92216; GSPATT00024948001.
GeneIDi5045391.
KEGGiptm:GSPATT00024948001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868667 Genomic DNA. Translation: CAK92216.1.
RefSeqiXP_001459613.1. XM_001459576.1.

3D structure databases

ProteinModelPortaliA0EA99.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi412030.XP_001459613.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiCAK92216; CAK92216; GSPATT00024948001.
GeneIDi5045391.
KEGGiptm:GSPATT00024948001.

Phylogenomic databases

InParanoidiA0EA99.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Stock d4-2Imported.

Entry informationi

Entry nameiA0EA99_PARTE
AccessioniPrimary (citable) accession number: A0EA99
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: June 24, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.