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Protein
Submitted name:

Uncharacterized protein

Gene

GSPATT00019870001

Organism
Paramecium tetraurelia
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoproteinUniRule annotationSAAS annotation, RNA-bindingUniRule annotation
Biological processmRNA processing, mRNA splicing

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:GSPATT00019870001Imported
OrganismiParamecium tetraureliaImported
Taxonomic identifieri5888 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaPeniculidaParameciidaeParamecium
Proteomesi
  • UP000000600 Componenti: Partially assembled WGS sequence

Subcellular locationi

  • Nucleus UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusUniRule annotation, SpliceosomeUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi412030.XP_001453574.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 75SmInterPro annotationAdd BLAST66

Sequence similaritiesi

Belongs to the snRNP Sm proteins family.UniRule annotation

Phylogenomic databases

eggNOGiKOG1783. Eukaryota.
COG1958. LUCA.
InParanoidiA0DT10.
KOiK12625.
OMAiVMYISAD.

Family and domain databases

InterProiView protein in InterPro
IPR016487. Lsm6/sSmF.
IPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
PfamiView protein in Pfam
PF01423. LSM. 1 hit.
PIRSFiPIRSF006609. snRNP_SmF. 1 hit.
SMARTiView protein in SMART
SM00651. Sm. 1 hit.
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

A0DT10-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHEKRTSAD FFKQVFGRTV NVKLHNRTEY IGVLAALDGN MNLVLEQCEE
60 70 80
YLEQKLINKY GQILLRGNNV LYISAKFNQK QQQEEEV
Length:87
Mass (Da):10,164
Last modified:November 28, 2006 - v1
Checksum:i33E05F571AD88010
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868563 Genomic DNA. Translation: CAK86177.1.
RefSeqiXP_001453574.1. XM_001453537.1.

Genome annotation databases

EnsemblProtistsiCAK86177; CAK86177; GSPATT00019870001.
GeneIDi5039359.
KEGGiptm:GSPATT00019870001.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiA0DT10_PARTE
AccessioniPrimary (citable) accession number: A0DT10
Entry historyiIntegrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: June 7, 2017
This is version 44 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported