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Protein
Submitted name:

Chromosome undetermined scaffold_62, whole genome shotgun sequence

Gene

GSPATT00019870001

Organism
Paramecium tetraurelia
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

RibonucleoproteinUniRule annotation

Keywords - Biological processi

mRNA processing, mRNA splicing

Keywords - Ligandi

RNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Chromosome undetermined scaffold_62, whole genome shotgun sequenceImported
Gene namesi
ORF Names:GSPATT00019870001Imported
OrganismiParamecium tetraureliaImported
Taxonomic identifieri5888 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaPeniculidaParameciidaeParamecium
ProteomesiUP000000600 Componenti: Partially assembled WGS sequence

Subcellular locationi

  • Nucleus UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation, SpliceosomeUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi412030.XP_001453574.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the snRNP Sm proteins family. SmF/LSm6 subfamily.UniRule annotation

Phylogenomic databases

InParanoidiA0DT10.
KOiK12625.

Family and domain databases

InterProiIPR016487. Lsm6/sSmF.
IPR010920. LSM_dom.
IPR001163. Ribonucl_LSM.
IPR006649. Ribonucl_LSM_euk/arc.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
PIRSFiPIRSF006609. snRNP_SmF. 1 hit.
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

A0DT10-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHEKRTSAD FFKQVFGRTV NVKLHNRTEY IGVLAALDGN MNLVLEQCEE
60 70 80
YLEQKLINKY GQILLRGNNV LYISAKFNQK QQQEEEV
Length:87
Mass (Da):10,164
Last modified:November 28, 2006 - v1
Checksum:i33E05F571AD88010
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868563 Genomic DNA. Translation: CAK86177.1.
RefSeqiXP_001453574.1. XM_001453537.1.

Genome annotation databases

EnsemblProtistsiCAK86177; CAK86177; GSPATT00019870001.
GeneIDi5039359.
KEGGiptm:GSPATT00019870001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868563 Genomic DNA. Translation: CAK86177.1.
RefSeqiXP_001453574.1. XM_001453537.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi412030.XP_001453574.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiCAK86177; CAK86177; GSPATT00019870001.
GeneIDi5039359.
KEGGiptm:GSPATT00019870001.

Phylogenomic databases

InParanoidiA0DT10.
KOiK12625.

Family and domain databases

InterProiIPR016487. Lsm6/sSmF.
IPR010920. LSM_dom.
IPR001163. Ribonucl_LSM.
IPR006649. Ribonucl_LSM_euk/arc.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
PIRSFiPIRSF006609. snRNP_SmF. 1 hit.
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Stock d4-2Imported.

Entry informationi

Entry nameiA0DT10_PARTE
AccessioniPrimary (citable) accession number: A0DT10
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: June 24, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.