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Protein

Histone deacetylase

Gene

GSPATT00006666001

Organism
Paramecium tetraurelia
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
Gene namesi
ORF Names:GSPATT00006666001Imported
OrganismiParamecium tetraureliaImported
Taxonomic identifieri5888 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaPeniculidaParameciidaeParamecium
ProteomesiUP000000600 Componenti: Partially assembled WGS sequence

Subcellular locationi

  • Nucleus UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi412030.XP_001434757.1.

Structurei

3D structure databases

ProteinModelPortaliA0C993.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

InParanoidiA0C993.
KOiK06067.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

A0C993-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLFKQKVTY YYDEEFGTFN YSTTHPMKPL RVAITDDLVG HYGLKQYMNC
60 70 80 90 100
IVRCINLVDE DVLTQFHSEE YINLIKIITP ENKCQHEDQL YRFNFMEDCP
110 120 130 140 150
VLDRLFDFCL CQTSGSVGAA CVIADQKSNI AINWSGGLHH AKQSEASGFC
160 170 180 190 200
YVNDCVLGIL ELLKTYQRVL YIDIDIHHGD GVEEAFYLTD RVMTCSFHKF
210 220 230 240 250
KEYFPGTGHI DDIGHDKGKY YAVNFPLNEG LNDDSIQLIF KPVIDSIMEN
260 270 280 290 300
FRPDVVMLQG GTDSLSGDRL GCFNLSIKGH GSCTEYLKKF NVPIIMVGGG
310 320 330 340 350
GYTLRNVPRC WTYETSLALN VPIPDNIPDE SDYKIYFGPE YKLHLPISNM
360 370 380 390 400
EEQNSKEYLE KNISQRIQNK FEPGCAQIDH YAIGKESRQK IDYQELFSSY
410
NDKREEMQLE QNQDQQE
Length:417
Mass (Da):48,016
Last modified:November 28, 2006 - v1
Checksum:i99A8C2AE48F42DA9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868052 Genomic DNA. Translation: CAK67360.1.
RefSeqiXP_001434757.1. XM_001434720.1.

Genome annotation databases

EnsemblProtistsiCAK67360; CAK67360; GSPATT00006666001.
GeneIDi5020542.
KEGGiptm:GSPATT00006666001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT868052 Genomic DNA. Translation: CAK67360.1.
RefSeqiXP_001434757.1. XM_001434720.1.

3D structure databases

ProteinModelPortaliA0C993.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi412030.XP_001434757.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiCAK67360; CAK67360; GSPATT00006666001.
GeneIDi5020542.
KEGGiptm:GSPATT00006666001.

Phylogenomic databases

InParanoidiA0C993.
KOiK06067.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Stock d4-2Imported.

Entry informationi

Entry nameiA0C993_PARTE
AccessioniPrimary (citable) accession number: A0C993
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: June 24, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.