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Protein

DNA-directed RNA polymerase subunit K

Gene

rpoK

Organism
Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT) (Methanosaeta thermophila)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferase, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit KUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
Name:rpoKUniRule annotation
Ordered Locus Names:Mthe_0479
OrganismiMethanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT) (Methanosaeta thermophila)
Taxonomic identifieri349307 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosaetaceaeMethanothrix
Proteomesi
  • UP000000674 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001947361 – 60DNA-directed RNA polymerase subunit KAdd BLAST60

Interactioni

Protein-protein interaction databases

STRINGi349307.Mthe_0479

Structurei

3D structure databases

ProteinModelPortaliA0B6E6
SMRiA0B6E6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01268 Archaea
COG1758 LUCA
HOGENOMiHOG000225272
KOiK03055
OMAiHNRYEKA
OrthoDBiPOG093Z0OHE

Family and domain databases

HAMAPiMF_00192 RNApol_arch_K, 1 hit
InterProiView protein in InterPro
IPR020708 DNA-dir_RNA_polK_14-18kDa_CS
IPR006110 Pol_omega/K/RPB6
IPR036161 RPB6/omega_like_sf
IPR006111 RpoK/Rpb6
PfamiView protein in Pfam
PF01192 RNA_pol_Rpb6, 1 hit
PIRSFiPIRSF000778 RpoK/RPB6, 1 hit
SMARTiView protein in SMART
SM01409 RNA_pol_Rpb6, 1 hit
SUPFAMiSSF63562 SSF63562, 1 hit
PROSITEiView protein in PROSITE
PS01111 RNA_POL_K_14KD, 1 hit

Sequencei

Sequence statusi: Complete.

A0B6E6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGEKYTRFE RARIVGARAL QIFMGAPVLI RTDSIDPLEI ALEEMRLGVI
60
PITVKRDRKR
Length:60
Mass (Da):6,926
Last modified:November 28, 2006 - v1
Checksum:i7858FA93E2294F1C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000477 Genomic DNA Translation: ABK14270.1

Genome annotation databases

EnsemblBacteriaiABK14270; ABK14270; Mthe_0479
KEGGimtp:Mthe_0479

Similar proteinsi

Entry informationi

Entry nameiRPOK_METTP
AccessioniPrimary (citable) accession number: A0B6E6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: November 28, 2006
Last modified: March 28, 2018
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health