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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bcen2424_6876

Organism
Burkholderia cenocepacia (strain HI2424)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBCEN331272:GHR7-6961-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bcen2424_6876Imported
Encoded oniPlasmid pHI2424-1Imported
OrganismiBurkholderia cenocepacia (strain HI2424)Imported
Taxonomic identifieri331272 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000776 Componenti: Plasmid pHI2424-1

Interactioni

Protein-protein interaction databases

STRINGi331272.Bcen2424_6876.

Structurei

3D structure databases

ProteinModelPortaliA0B4W1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
OMAiVEVKYGQ.
OrthoDBiEOG6BW4VZ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0B4W1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRWTSERGI RARTPVARNG RMPEFIEPSL AVLAAEPPTS GEWGYEIKFD
60 70 80 90 100
GYRMLARIDA GDVRIFTRNG HDWTARLPHL RSVLERLPVN RAWIDAEAVW
110 120 130 140 150
FDTEGRPNFN GLQNAFDRRR TAGISLVVFD LMWLNNNDLR PWTWRERRAT
160 170 180 190 200
LTKLVAEILG DEVRFSEAID ADPDAMLASA CALGLEGIMG KRVDAPYRSG
210 220 230 240 250
RSDRWIKLKC SRRQEFVIGG FSRRKGATGG VRAVLLGVYE EGGQLRYVGH
260 270 280 290 300
VAPRFAPRQA REFEDRLSSL GRQRSPFVRA PEPEADREFH WLKPELVAEV
310 320 330 340
AFLEWTPTGQ LRHPSFRGLR ADKPARTVTR EDPLEVKRAR NSK
Length:343
Mass (Da):39,175
Last modified:November 27, 2006 - v1
Checksum:i50D49CBBD0F680A3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000461 Genomic DNA. Translation: ABK13605.1.
RefSeqiWP_011695138.1. NC_008545.1.
YP_840498.1. NC_008545.1.

Genome annotation databases

EnsemblBacteriaiABK13605; ABK13605; Bcen2424_6876.
KEGGibch:Bcen2424_6876.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000461 Genomic DNA. Translation: ABK13605.1.
RefSeqiWP_011695138.1. NC_008545.1.
YP_840498.1. NC_008545.1.

3D structure databases

ProteinModelPortaliA0B4W1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi331272.Bcen2424_6876.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK13605; ABK13605; Bcen2424_6876.
KEGGibch:Bcen2424_6876.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
OMAiVEVKYGQ.
OrthoDBiEOG6BW4VZ.

Enzyme and pathway databases

BioCyciBCEN331272:GHR7-6961-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of plasmid 1 of Burkholderia cenocepacia HI2424."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
    , Kim E., LiPuma J.J., Gonzalez C.F., Konstantinidis K., Tiedje J.M., Richardson P.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiA0B4W1_BURCH
AccessioniPrimary (citable) accession number: A0B4W1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 27, 2006
Last sequence update: November 27, 2006
Last modified: March 31, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.