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A0B4W1 (A0B4W1_BURCH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Bcen2424_6876 EMBL ABK13605.1
Encoded onPlasmid pHI2424-1
OrganismBurkholderia cenocepacia (strain HI2424) [Complete proteome] [HAMAP] EMBL ABK13605.1
Taxonomic identifier331272 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex

Protein attributes

Sequence length343 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABK13605.1
   Technical termComplete proteome
Plasmid EMBL ABK13605.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A0B4W1 [UniParc].

Last modified November 28, 2006. Version 1.
Checksum: 50D49CBBD0F680A3

FASTA34339,175
        10         20         30         40         50         60 
MGRWTSERGI RARTPVARNG RMPEFIEPSL AVLAAEPPTS GEWGYEIKFD GYRMLARIDA 

        70         80         90        100        110        120 
GDVRIFTRNG HDWTARLPHL RSVLERLPVN RAWIDAEAVW FDTEGRPNFN GLQNAFDRRR 

       130        140        150        160        170        180 
TAGISLVVFD LMWLNNNDLR PWTWRERRAT LTKLVAEILG DEVRFSEAID ADPDAMLASA 

       190        200        210        220        230        240 
CALGLEGIMG KRVDAPYRSG RSDRWIKLKC SRRQEFVIGG FSRRKGATGG VRAVLLGVYE 

       250        260        270        280        290        300 
EGGQLRYVGH VAPRFAPRQA REFEDRLSSL GRQRSPFVRA PEPEADREFH WLKPELVAEV 

       310        320        330        340 
AFLEWTPTGQ LRHPSFRGLR ADKPARTVTR EDPLEVKRAR NSK 

« Hide

References

[1]"Complete sequence of plasmid 1 of Burkholderia cenocepacia HI2424."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., LiPuma J.J., Gonzalez C.F., Konstantinidis K., Tiedje J.M., Richardson P.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HI2424.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000461 Genomic DNA. Translation: ABK13605.1.
RefSeqYP_840498.1. NC_008545.1.

3D structure databases

ProteinModelPortalA0B4W1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING331272.Bcen2424_6876.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABK13605; ABK13605; Bcen2424_6876.
GeneID4454916.
KEGGbch:Bcen2424_6876.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222509.
KOK01971.
OMAVEVKYGQ.
OrthoDBEOG6BW4VZ.
ProtClustDBCLSK899085.

Enzyme and pathway databases

BioCycBCEN331272:GHR7-6961-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA0B4W1_BURCH
AccessionPrimary (citable) accession number: A0B4W1
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: April 16, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)