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A0B4W1

- A0B4W1_BURCH

UniProt

A0B4W1 - A0B4W1_BURCH

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bcen2424_6876

Organism
Burkholderia cenocepacia (strain HI2424)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBCEN331272:GHR7-6961-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bcen2424_6876Imported
Encoded oniPlasmid pHI2424-1Imported
OrganismiBurkholderia cenocepacia (strain HI2424)Imported
Taxonomic identifieri331272 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000776: Plasmid pHI2424-1

Interactioni

Protein-protein interaction databases

STRINGi331272.Bcen2424_6876.

Structurei

3D structure databases

ProteinModelPortaliA0B4W1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.
OrthoDBiEOG6BW4VZ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0B4W1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MGRWTSERGI RARTPVARNG RMPEFIEPSL AVLAAEPPTS GEWGYEIKFD
60 70 80 90 100
GYRMLARIDA GDVRIFTRNG HDWTARLPHL RSVLERLPVN RAWIDAEAVW
110 120 130 140 150
FDTEGRPNFN GLQNAFDRRR TAGISLVVFD LMWLNNNDLR PWTWRERRAT
160 170 180 190 200
LTKLVAEILG DEVRFSEAID ADPDAMLASA CALGLEGIMG KRVDAPYRSG
210 220 230 240 250
RSDRWIKLKC SRRQEFVIGG FSRRKGATGG VRAVLLGVYE EGGQLRYVGH
260 270 280 290 300
VAPRFAPRQA REFEDRLSSL GRQRSPFVRA PEPEADREFH WLKPELVAEV
310 320 330 340
AFLEWTPTGQ LRHPSFRGLR ADKPARTVTR EDPLEVKRAR NSK
Length:343
Mass (Da):39,175
Last modified:November 28, 2006 - v1
Checksum:i50D49CBBD0F680A3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000461 Genomic DNA. Translation: ABK13605.1.
RefSeqiWP_011695138.1. NC_008545.1.
YP_840498.1. NC_008545.1.

Genome annotation databases

EnsemblBacteriaiABK13605; ABK13605; Bcen2424_6876.
GeneIDi4454916.
KEGGibch:Bcen2424_6876.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000461 Genomic DNA. Translation: ABK13605.1 .
RefSeqi WP_011695138.1. NC_008545.1.
YP_840498.1. NC_008545.1.

3D structure databases

ProteinModelPortali A0B4W1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 331272.Bcen2424_6876.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABK13605 ; ABK13605 ; Bcen2424_6876 .
GeneIDi 4454916.
KEGGi bch:Bcen2424_6876.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi VEVKYGQ.
OrthoDBi EOG6BW4VZ.

Enzyme and pathway databases

BioCyci BCEN331272:GHR7-6961-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of plasmid 1 of Burkholderia cenocepacia HI2424."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
    , Kim E., LiPuma J.J., Gonzalez C.F., Konstantinidis K., Tiedje J.M., Richardson P.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiA0B4W1_BURCH
AccessioniPrimary (citable) accession number: A0B4W1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: October 1, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3