Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Transcriptional regulator, TetR family

Gene

Bcen2424_5784

Organism
Burkholderia cenocepacia (strain HI2424)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciBCEN331272:GHR7-5864-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, TetR familyImported
Gene namesi
Ordered Locus Names:Bcen2424_5784Imported
OrganismiBurkholderia cenocepacia (strain HI2424)Imported
Taxonomic identifieri331272 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
ProteomesiUP000000776 Componenti: Chromosome 2

Structurei

3D structure databases

ProteinModelPortaliA0B4E1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation
Contains HTH tetR-type DNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG1309.
HOGENOMiHOG000221479.
OMAiHQLWVEI.
OrthoDBiEOG6PP9N1.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0B4E1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRFSPVISG SMARTRNENL HQQRREQILT AAARVFKAKG FHGARTEDIC
60 70 80 90 100
AAADMSAGAV FRYFADKREM IDAIIAVEVE RYTQDFDRIL SKDGLRWLAN
110 120 130 140 150
ITADELTGML AQGDDGLGVD SWLELARDAE RRPDIVGLDR KMRADLAGLL
160 170 180 190 200
ASGQAEGWVR PSLDPAGTTN IVFAMFNGLW LDRSLGTSVD MERTAAALGD

FFRTCVLVA
Length:209
Mass (Da):23,101
Last modified:November 28, 2006 - v1
Checksum:iBBAF8619FD007194
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000459 Genomic DNA. Translation: ABK12517.1.
RefSeqiWP_011548677.1. NC_008543.1.
YP_839410.1. NC_008543.1.

Genome annotation databases

EnsemblBacteriaiABK12517; ABK12517; Bcen2424_5784.
KEGGibch:Bcen2424_5784.
PATRICi19069207. VBIBurCen15205_5920.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000459 Genomic DNA. Translation: ABK12517.1.
RefSeqiWP_011548677.1. NC_008543.1.
YP_839410.1. NC_008543.1.

3D structure databases

ProteinModelPortaliA0B4E1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK12517; ABK12517; Bcen2424_5784.
KEGGibch:Bcen2424_5784.
PATRICi19069207. VBIBurCen15205_5920.

Phylogenomic databases

eggNOGiCOG1309.
HOGENOMiHOG000221479.
OMAiHQLWVEI.
OrthoDBiEOG6PP9N1.

Enzyme and pathway databases

BioCyciBCEN331272:GHR7-5864-MONOMER.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 2 of Burkholderia cenocepacia HI2424."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.
    , Kim E., LiPuma J.J., Gonzalez C.F., Konstantinidis K., Tiedje J.M., Richardson P.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HI2424Imported.

Entry informationi

Entry nameiA0B4E1_BURCH
AccessioniPrimary (citable) accession number: A0B4E1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: June 24, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.