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Protein
Submitted name:

N-acetylmuramoyl-L-alanine amidase, family 4

Gene

lwe2639

Organism
Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Enzyme and pathway databases

BioCyciLWEL386043:GI5X-2722-MONOMER.

Protein family/group databases

CAZyiCBM50. Carbohydrate-Binding Module Family 50.
GH73. Glycoside Hydrolase Family 73.

Names & Taxonomyi

Protein namesi
Submitted name:
N-acetylmuramoyl-L-alanine amidase, family 4Imported (EC:3.5.1.28Imported)
Gene namesi
Ordered Locus Names:lwe2639Imported
OrganismiListeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)Imported
Taxonomic identifieri386043 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
Proteomesi
  • UP000000779 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei27 – 4620HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi386043.lwe2639.

Structurei

3D structure databases

ProteinModelPortaliA0AM25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini143 – 303161LYZ2InterPro annotationAdd
BLAST
Domaini331 – 37444LysMInterPro annotationAdd
BLAST
Domaini403 – 44644LysMInterPro annotationAdd
BLAST
Domaini476 – 51944LysMInterPro annotationAdd
BLAST
Domaini544 – 58744LysMInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili3 – 2624Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG41068JE. Bacteria.
COG1388. LUCA.
COG1705. LUCA.
HOGENOMiHOG000083046.
OMAiSNAKIYT.
OrthoDBiEOG6GTZPF.

Family and domain databases

Gene3Di3.10.350.10. 4 hits.
InterProiIPR018392. LysM_dom.
IPR002901. MGlyc_endo_b_GlcNAc-like_dom.
[Graphical view]
PfamiPF01832. Glucosaminidase. 1 hit.
PF01476. LysM. 4 hits.
[Graphical view]
SMARTiSM00257. LysM. 4 hits.
SM00047. LYZ2. 1 hit.
[Graphical view]
SUPFAMiSSF54106. SSF54106. 4 hits.

Sequencei

Sequence statusi: Complete.

A0AM25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKTRKERIL EALQEEKKNK KSKKIKTGAT IAGVTAIATS ITVPGIEVIV
60 70 80 90 100
QADETAPADE AVKSADKTAQ PEADSATKTT TETTPERNQI EPKTETQPKT
110 120 130 140 150
PTEKTPPAEK EVTPTVQTAT ISNSDNVTSS STPATYNVLQ KSALRSGATV
160 170 180 190 200
QSFIQTIQSS SSQIAANNDL YASVMIAQAI LESAYGTSEL GSAPNYNLFG
210 220 230 240 250
IKGAYNGKSY TKQTLEDDGK GNYYTITAKF RKYPSYHQSL EDYAQVIRKG
260 270 280 290 300
PSWNSNYYSK VWKSNTKSYK DATQALTGTY ATDTAYASKL NNLISTYNLT
310 320 330 340 350
QYDTGNASNG SGSSNTGNSG NSNSSSSNSA TYTVVKGDSL WKIATKYNVS
360 370 380 390 400
VANLKSWNNL KSDNIYIGQK LKVTAGSTSN TSKPNTGSNT NTSKPSTSTN
410 420 430 440 450
AKTYTVKKGD SLWKIATNNK VTIANLKSWN NLKSDFIYPG QTLKVSASST
460 470 480 490 500
SSNTNTSKPS TGSSTNTSKP NTNAKTYTVK KGDSLWKIAN QNKTTVTNLK
510 520 530 540 550
SWNNLKSDNI YIGQKLKVSA GSITNNTNTS KPSTSKPSNS STKTYTVKKG
560 570 580
DSLWSISRQY KTTVDNIKSW NKLTSNTIYI GQKITIK
Length:587
Mass (Da):63,440
Last modified:November 28, 2006 - v1
Checksum:i15AE3DCF31347D81
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM263198 Genomic DNA. Translation: CAK22057.1.
RefSeqiWP_011703334.1. NC_008555.1.

Genome annotation databases

EnsemblBacteriaiCAK22057; CAK22057; lwe2639.
KEGGilwe:lwe2639.
PATRICi20332547. VBILisWel39304_2647.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM263198 Genomic DNA. Translation: CAK22057.1.
RefSeqiWP_011703334.1. NC_008555.1.

3D structure databases

ProteinModelPortaliA0AM25.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi386043.lwe2639.

Protein family/group databases

CAZyiCBM50. Carbohydrate-Binding Module Family 50.
GH73. Glycoside Hydrolase Family 73.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAK22057; CAK22057; lwe2639.
KEGGilwe:lwe2639.
PATRICi20332547. VBILisWel39304_2647.

Phylogenomic databases

eggNOGiENOG41068JE. Bacteria.
COG1388. LUCA.
COG1705. LUCA.
HOGENOMiHOG000083046.
OMAiSNAKIYT.
OrthoDBiEOG6GTZPF.

Enzyme and pathway databases

BioCyciLWEL386043:GI5X-2722-MONOMER.

Family and domain databases

Gene3Di3.10.350.10. 4 hits.
InterProiIPR018392. LysM_dom.
IPR002901. MGlyc_endo_b_GlcNAc-like_dom.
[Graphical view]
PfamiPF01832. Glucosaminidase. 1 hit.
PF01476. LysM. 4 hits.
[Graphical view]
SMARTiSM00257. LysM. 4 hits.
SM00047. LYZ2. 1 hit.
[Graphical view]
SUPFAMiSSF54106. SSF54106. 4 hits.
ProtoNetiSearch...

Publicationsi

  1. "Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes."
    Hain T., Steinweg C., Kuenne C.T., Billion A., Ghai R., Chatterjee S.S., Domann E., Kaerst U., Goesmann A., Bekel T., Bartels D., Kaiser O., Meyer F., Puehler A., Weisshaar B., Wehland J., Liang C., Dandekar T.
    , Lampidis R., Kreft J., Goebel W., Chakraborty T.
    J. Bacteriol. 188:7405-7415(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35897 / DSM 20650 / SLCC5334Imported.

Entry informationi

Entry nameiA0AM25_LISW6
AccessioniPrimary (citable) accession number: A0AM25
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: May 11, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.