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Protein
Submitted name:

Listeria welshimeri serovar 6b str. SLCC5334 complete genome

Gene

lwe0277

Organism
Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseImported

Enzyme and pathway databases

BioCyciLWEL386043:GI5X-293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Listeria welshimeri serovar 6b str. SLCC5334 complete genomeImported (EC:5.3.1.5Imported)
Gene namesi
Ordered Locus Names:lwe0277Imported
OrganismiListeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)Imported
Taxonomic identifieri386043 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
ProteomesiUP000000779 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi386043.lwe0277.

Structurei

3D structure databases

ProteinModelPortaliA0AFB3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG4952.
HOGENOMiHOG000224339.
KOiK01805.
OMAiFDTFPDA.
OrthoDBiEOG651SS4.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.

Sequencei

Sequence statusi: Complete.

A0AFB3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLATRINSF LSVYDNDLKN VFGEFKKLGL GYIDLNYPEH IEKFKAPEMK
60 70 80 90 100
ALIQENDLKL NGVALRFRSE FINGELGNSD PKISANALKL CKDAADYCRE
110 120 130 140 150
AGGKVVTIWL GFDGFDYSFQ INYKKVWEQL RNAFTEIADY APDLKISIEY
160 170 180 190 200
KPFQPRAYAF IDSMGLTGMM LNDINRDNVG VTLDYCHMLM KHENPAFGAD
210 220 230 240 250
IFGSQGKLYG VHLNDGYGLN DDGLMIGSAT PFKTLEFLYY VKKHNYDGVI
260 270 280 290 300
YFDTFPIIEH AAKECEQNIR MITALNAMID NVGLAYIQTI IDKNDAVEAN
310
KLMLQFLTSS N
Length:311
Mass (Da):35,247
Last modified:November 28, 2006 - v1
Checksum:i526B39FCCFD99485
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM263198 Genomic DNA. Translation: CAK19695.1.
RefSeqiWP_011701133.1. NC_008555.1.
YP_848478.1. NC_008555.1.

Genome annotation databases

EnsemblBacteriaiCAK19695; CAK19695; lwe0277.
KEGGilwe:lwe0277.
PATRICi20327679. VBILisWel39304_0280.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM263198 Genomic DNA. Translation: CAK19695.1.
RefSeqiWP_011701133.1. NC_008555.1.
YP_848478.1. NC_008555.1.

3D structure databases

ProteinModelPortaliA0AFB3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi386043.lwe0277.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAK19695; CAK19695; lwe0277.
KEGGilwe:lwe0277.
PATRICi20327679. VBILisWel39304_0280.

Phylogenomic databases

eggNOGiCOG4952.
HOGENOMiHOG000224339.
KOiK01805.
OMAiFDTFPDA.
OrthoDBiEOG651SS4.

Enzyme and pathway databases

BioCyciLWEL386043:GI5X-293-MONOMER.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes."
    Hain T., Steinweg C., Kuenne C.T., Billion A., Ghai R., Chatterjee S.S., Domann E., Karst U., Goesmann A., Bekel T., Bartels D., Kaiser O., Meyer F., Ohler A.P., Weisshaar B., Wehland J., Liang C., Dandekar T.
    , Lampidis R., Kreft J., Goebel W., Chakraborty T.
    J. Bacteriol. 188:7405-7415(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35897 / DSM 20650 / SLCC5334Imported.

Entry informationi

Entry nameiA0AFB3_LISW6
AccessioniPrimary (citable) accession number: A0AFB3
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2006
Last sequence update: November 28, 2006
Last modified: May 27, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.