Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A0A385

- NU4C_COFAR

UniProt

A0A385 - NU4C_COFAR

Protein

NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

Gene

ndhD

Organism
Coffea arabica (Arabian coffee)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 27 (01 Oct 2014)
      Sequence version 1 (14 Nov 2006)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

    GO - Molecular functioni

    1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
    2. quinone binding Source: UniProtKB-KW

    GO - Biological processi

    1. ATP synthesis coupled electron transport Source: InterPro

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Ligandi

    NAD, NADP, Plastoquinone

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation (EC:1.6.5.-UniRule annotation)
    Alternative name(s):
    NAD(P)H dehydrogenase, chain 4UniRule annotation
    NADH-plastoquinone oxidoreductase chain 4UniRule annotation
    Gene namesi
    Name:ndhDUniRule annotation
    Encoded oniPlastid; Chloroplast
    OrganismiCoffea arabica (Arabian coffee)
    Taxonomic identifieri13443 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeCoffeeaeCoffea

    Subcellular locationi

    Plastidchloroplast thylakoid membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

    GO - Cellular componenti

    1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Membrane, Plastid, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticPRO_0000275903Add
    BLAST

    Keywords - PTMi

    Quinone

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei4 – 2421HelicalUniRule annotationAdd
    BLAST
    Transmembranei35 – 5521HelicalUniRule annotationAdd
    BLAST
    Transmembranei87 – 10721HelicalUniRule annotationAdd
    BLAST
    Transmembranei113 – 13018HelicalUniRule annotationAdd
    BLAST
    Transmembranei134 – 15421HelicalUniRule annotationAdd
    BLAST
    Transmembranei167 – 18721HelicalUniRule annotationAdd
    BLAST
    Transmembranei211 – 23121HelicalUniRule annotationAdd
    BLAST
    Transmembranei242 – 26221HelicalUniRule annotationAdd
    BLAST
    Transmembranei272 – 29221HelicalUniRule annotationAdd
    BLAST
    Transmembranei305 – 32521HelicalUniRule annotationAdd
    BLAST
    Transmembranei330 – 35021HelicalUniRule annotationAdd
    BLAST
    Transmembranei364 – 38421HelicalUniRule annotationAdd
    BLAST
    Transmembranei386 – 40621HelicalUniRule annotationAdd
    BLAST
    Transmembranei416 – 43621HelicalUniRule annotationAdd
    BLAST
    Transmembranei463 – 48321HelicalUniRule annotationAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I subunit 4 family.UniRule annotation

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Family and domain databases

    HAMAPiMF_00491. NDH1_NuoM.
    InterProiIPR022997. NADH_Q_OxRdtase_chain4.
    IPR010227. NADH_Q_OxRdtase_chainM/4.
    IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR003918. NADH_UbQ_OxRdtase.
    [Graphical view]
    PfamiPF00361. Oxidored_q1. 1 hit.
    [Graphical view]
    PRINTSiPR01437. NUOXDRDTASE4.
    TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0A385-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNYFPWLTII VILPIFAGSL IFFLPHRGNR VIRWYTIFIC IFELLLTAYT    50
    FCYHFQTDDP LIQLMEDYKW IQLFDFHWRL GIDGLSIGPI LLTGFITTLA 100
    TLAAWPVTRD SRLFNFLMLA MYSAQIGLFS SRDLLLFFIM WELELIPVYL 150
    LLSMWGGKKR LYSATKFILY TAGGSIFLLM GVLGIGLYGS NEPTLNFETS 200
    ANQSYPLPLE IIFYIGFFIA FAVKLPIIPL HTWLPDTHGE AHYSTCMLLA 250
    GILLKMGAYG LVRINMELLS HAHSIFSPWL LIVGTIQIIY AASTSLGQRN 300
    LKKRIAYSSV SHMGFIIIGI GSITDTGLNG ALLQIISHGF IGAALFFLAG 350
    TTYDRIRLVY LDEMGGIAIL MPKIFTIFST FSMASLALPG MSGFVAELIV 400
    FFGIITSQKY LLMPKILITF VMAIGMILTP IYSLSMSRQM FYGYKFFNIP 450
    NSYFFDSGPR ELFLSISLFL PVLGIGMYPD FIFSLSVDKV EVILSNSFSK 500
    Length:500
    Mass (Da):56,431
    Last modified:November 14, 2006 - v1
    Checksum:i969C23001B2C46DC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF044213 Genomic DNA. Translation: ABJ89729.1.
    RefSeqiYP_817532.1. NC_008535.1.

    Genome annotation databases

    GeneIDi4421851.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF044213 Genomic DNA. Translation: ABJ89729.1 .
    RefSeqi YP_817532.1. NC_008535.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4421851.

    Family and domain databases

    HAMAPi MF_00491. NDH1_NuoM.
    InterProi IPR022997. NADH_Q_OxRdtase_chain4.
    IPR010227. NADH_Q_OxRdtase_chainM/4.
    IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR003918. NADH_UbQ_OxRdtase.
    [Graphical view ]
    Pfami PF00361. Oxidored_q1. 1 hit.
    [Graphical view ]
    PRINTSi PR01437. NUOXDRDTASE4.
    TIGRFAMsi TIGR01972. NDH_I_M. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms."
      Samson N., Bausher M.G., Lee S.-B., Jansen R.K., Daniell H.
      Plant Biotechnol. J. 5:339-353(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiNU4C_COFAR
    AccessioniPrimary (citable) accession number: A0A385
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: November 14, 2006
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3