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A0A385

- NU4C_COFAR

UniProt

A0A385 - NU4C_COFAR

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Protein
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Gene
ndhD
Organism
Coffea arabica (Arabian coffee)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.UniRule annotation

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase, chain 4
NADH-plastoquinone oxidoreductase chain 4
Gene namesi
Name:ndhD
Encoded oniPlastid; Chloroplast
OrganismiCoffea arabica (Arabian coffee)
Taxonomic identifieri13443 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeCoffeeaeCoffea

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421Helical; Reviewed prediction
Add
BLAST
Transmembranei35 – 5521Helical; Reviewed prediction
Add
BLAST
Transmembranei87 – 10721Helical; Reviewed prediction
Add
BLAST
Transmembranei113 – 13018Helical; Reviewed prediction
Add
BLAST
Transmembranei134 – 15421Helical; Reviewed prediction
Add
BLAST
Transmembranei167 – 18721Helical; Reviewed prediction
Add
BLAST
Transmembranei211 – 23121Helical; Reviewed prediction
Add
BLAST
Transmembranei242 – 26221Helical; Reviewed prediction
Add
BLAST
Transmembranei272 – 29221Helical; Reviewed prediction
Add
BLAST
Transmembranei305 – 32521Helical; Reviewed prediction
Add
BLAST
Transmembranei330 – 35021Helical; Reviewed prediction
Add
BLAST
Transmembranei364 – 38421Helical; Reviewed prediction
Add
BLAST
Transmembranei386 – 40621Helical; Reviewed prediction
Add
BLAST
Transmembranei416 – 43621Helical; Reviewed prediction
Add
BLAST
Transmembranei463 – 48321Helical; Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplasticUniRule annotation
PRO_0000275903Add
BLAST

Keywords - PTMi

Quinone

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

HAMAPiMF_00491. NDH1_NuoM.
InterProiIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSiPR01437. NUOXDRDTASE4.
TIGRFAMsiTIGR01972. NDH_I_M. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A385-1 [UniParc]FASTAAdd to Basket

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MNYFPWLTII VILPIFAGSL IFFLPHRGNR VIRWYTIFIC IFELLLTAYT    50
FCYHFQTDDP LIQLMEDYKW IQLFDFHWRL GIDGLSIGPI LLTGFITTLA 100
TLAAWPVTRD SRLFNFLMLA MYSAQIGLFS SRDLLLFFIM WELELIPVYL 150
LLSMWGGKKR LYSATKFILY TAGGSIFLLM GVLGIGLYGS NEPTLNFETS 200
ANQSYPLPLE IIFYIGFFIA FAVKLPIIPL HTWLPDTHGE AHYSTCMLLA 250
GILLKMGAYG LVRINMELLS HAHSIFSPWL LIVGTIQIIY AASTSLGQRN 300
LKKRIAYSSV SHMGFIIIGI GSITDTGLNG ALLQIISHGF IGAALFFLAG 350
TTYDRIRLVY LDEMGGIAIL MPKIFTIFST FSMASLALPG MSGFVAELIV 400
FFGIITSQKY LLMPKILITF VMAIGMILTP IYSLSMSRQM FYGYKFFNIP 450
NSYFFDSGPR ELFLSISLFL PVLGIGMYPD FIFSLSVDKV EVILSNSFSK 500
Length:500
Mass (Da):56,431
Last modified:November 14, 2006 - v1
Checksum:i969C23001B2C46DC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF044213 Genomic DNA. Translation: ABJ89729.1.
RefSeqiYP_817532.1. NC_008535.1.

Genome annotation databases

GeneIDi4421851.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF044213 Genomic DNA. Translation: ABJ89729.1 .
RefSeqi YP_817532.1. NC_008535.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4421851.

Family and domain databases

HAMAPi MF_00491. NDH1_NuoM.
InterProi IPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
[Graphical view ]
PRINTSi PR01437. NUOXDRDTASE4.
TIGRFAMsi TIGR01972. NDH_I_M. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms."
    Samson N., Bausher M.G., Lee S.-B., Jansen R.K., Daniell H.
    Plant Biotechnol. J. 5:339-353(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiNU4C_COFAR
AccessioniPrimary (citable) accession number: A0A385
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: November 14, 2006
Last modified: May 14, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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