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A0A385 (NU4C_COFAR) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

EC=1.6.5.-
Alternative name(s):
NAD(P)H dehydrogenase, chain 4
NADH-plastoquinone oxidoreductase chain 4
Gene names
Name:ndhD
Encoded onPlastid; Chloroplast
OrganismCoffea arabica (Arabian coffee)
Taxonomic identifier13443 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeCoffeeaeCoffea

Protein attributes

Sequence length500 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol. HAMAP-Rule MF_00491

Subcellular location

Plastidchloroplast thylakoid membrane; Multi-pass membrane protein Potential HAMAP-Rule MF_00491.

Sequence similarities

Belongs to the complex I subunit 4 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 500500NAD(P)H-quinone oxidoreductase chain 4, chloroplastic HAMAP-Rule MF_00491
PRO_0000275903

Regions

Transmembrane4 – 2421Helical; Potential
Transmembrane35 – 5521Helical; Potential
Transmembrane87 – 10721Helical; Potential
Transmembrane113 – 13018Helical; Potential
Transmembrane134 – 15421Helical; Potential
Transmembrane167 – 18721Helical; Potential
Transmembrane211 – 23121Helical; Potential
Transmembrane242 – 26221Helical; Potential
Transmembrane272 – 29221Helical; Potential
Transmembrane305 – 32521Helical; Potential
Transmembrane330 – 35021Helical; Potential
Transmembrane364 – 38421Helical; Potential
Transmembrane386 – 40621Helical; Potential
Transmembrane416 – 43621Helical; Potential
Transmembrane463 – 48321Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
A0A385 [UniParc].

Last modified November 14, 2006. Version 1.
Checksum: 969C23001B2C46DC

FASTA50056,431
        10         20         30         40         50         60 
MNYFPWLTII VILPIFAGSL IFFLPHRGNR VIRWYTIFIC IFELLLTAYT FCYHFQTDDP 

        70         80         90        100        110        120 
LIQLMEDYKW IQLFDFHWRL GIDGLSIGPI LLTGFITTLA TLAAWPVTRD SRLFNFLMLA 

       130        140        150        160        170        180 
MYSAQIGLFS SRDLLLFFIM WELELIPVYL LLSMWGGKKR LYSATKFILY TAGGSIFLLM 

       190        200        210        220        230        240 
GVLGIGLYGS NEPTLNFETS ANQSYPLPLE IIFYIGFFIA FAVKLPIIPL HTWLPDTHGE 

       250        260        270        280        290        300 
AHYSTCMLLA GILLKMGAYG LVRINMELLS HAHSIFSPWL LIVGTIQIIY AASTSLGQRN 

       310        320        330        340        350        360 
LKKRIAYSSV SHMGFIIIGI GSITDTGLNG ALLQIISHGF IGAALFFLAG TTYDRIRLVY 

       370        380        390        400        410        420 
LDEMGGIAIL MPKIFTIFST FSMASLALPG MSGFVAELIV FFGIITSQKY LLMPKILITF 

       430        440        450        460        470        480 
VMAIGMILTP IYSLSMSRQM FYGYKFFNIP NSYFFDSGPR ELFLSISLFL PVLGIGMYPD 

       490        500 
FIFSLSVDKV EVILSNSFSK 

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References

[1]"The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms."
Samson N., Bausher M.G., Lee S.-B., Jansen R.K., Daniell H.
Plant Biotechnol. J. 5:339-353(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EF044213 Genomic DNA. Translation: ABJ89729.1.
RefSeqYP_817532.1. NC_008535.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4421851.

Phylogenomic databases

ProtClustDBCHL00011.

Family and domain databases

HAMAPMF_00491. NDH1_NuoM.
InterProIPR022997. NADH_Q_OxRdtase_chain4.
IPR010227. NADH_Q_OxRdtase_chainM/4.
IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR003918. NADH_UbQ_OxRdtase.
[Graphical view]
PfamPF00361. Oxidored_q1. 1 hit.
[Graphical view]
PRINTSPR01437. NUOXDRDTASE4.
TIGRFAMsTIGR01972. NDH_I_M. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNU4C_COFAR
AccessionPrimary (citable) accession number: A0A385
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: November 14, 2006
Last modified: February 19, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families