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A0A382

- NU5C_COFAR

UniProt

A0A382 - NU5C_COFAR

Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene

ndhF

Organism
Coffea arabica (Arabian coffee)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (14 Nov 2006)
      Previous versions | rss
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    Functioni

    NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.By similarity

    Catalytic activityi

    NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

    GO - Molecular functioni

    1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
    2. quinone binding Source: UniProtKB-KW

    GO - Biological processi

    1. ATP synthesis coupled electron transport Source: InterPro
    2. transport Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Transport

    Keywords - Ligandi

    NAD, NADP, Plastoquinone

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
    Alternative name(s):
    NAD(P)H dehydrogenase subunit 5
    NADH-plastoquinone oxidoreductase subunit 5
    Gene namesi
    Name:ndhF
    Encoded oniPlastid; Chloroplast
    OrganismiCoffea arabica (Arabian coffee)
    Taxonomic identifieri13443 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeCoffeeaeCoffea

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
    2. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Chloroplast, Membrane, Plastid, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 739739NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000360925Add
    BLAST

    Keywords - PTMi

    Quinone

    Interactioni

    Subunit structurei

    NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.By similarity

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei9 – 2921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei40 – 6021HelicalSequence AnalysisAdd
    BLAST
    Transmembranei89 – 10921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei125 – 14521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei147 – 16721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei184 – 20421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei224 – 24421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei258 – 27821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei289 – 31123HelicalSequence AnalysisAdd
    BLAST
    Transmembranei318 – 33821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei354 – 37421HelicalSequence AnalysisAdd
    BLAST
    Transmembranei396 – 41621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei427 – 44721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei546 – 56621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei605 – 62521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei718 – 73821HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I subunit 5 family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Family and domain databases

    InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
    IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
    IPR003945. NADHpl_OxRdtase_5.
    IPR018393. NADHpl_OxRdtase_5_subgr.
    [Graphical view]
    PfamiPF00361. Oxidored_q1. 1 hit.
    PF01010. Oxidored_q1_C. 1 hit.
    PF00662. Oxidored_q1_N. 1 hit.
    [Graphical view]
    PRINTSiPR01435. NPOXDRDTASE5.
    TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0A382-1 [UniParc]FASTAAdd to Basket

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    MQQTYQYGWI IPFIPLPIPI LIGVGLLLFP TATKNLRRMW SFQSVLLLTI    50
    VMIFSINLSI QQINSNSIYQ YVWSWIINND FSLEFGYLID PLTSIMSILI 100
    TTVGIMVLIY SDNYMAHDQA YLRFFAYMGF FSTSMLGLVT SSNLIQIYIF 150
    WELVGMCSYL LIGFWFTRPL AANACQKAFV TNRIGDFGLL LGILGFYWIT 200
    GSFEFRDLFE IFNNLIYDNE VNSLFVTLCA GLVFAGAVAK SAQFPLHVWL 250
    PDAMEGPTPI SALIHAATMV AAGIFLVARL IPLFIVIPYI MNFISLIGII 300
    TVLLGATLAL AQKDIKRGLA FSTMSQLGYM MLALGMGSYR SALFHLITHA 350
    YSKALLFLGS GSVIHSMETI VGYSPYKSQN MVLMGGLTKH IPITKNTFLL 400
    GTLSLCGIPP LACFWSKDEI LNDSWLYSTI FAIIAWATAG LTAFYIFRIY 450
    LLTFEGHLSV HFQNYIGKEK VFFYSISLWG RGASKKINNN FSLSTMNNIE 500
    SSSFLKKKTY PIAENVRNVT RPFITITHFE NKKFYSYPYE PDNTMLFPLL 550
    ILGLFTLFVG SIGIPFNQEG VDLBILSKWL TPSINLLHQK LSNSMDWYEF 600
    WKDTVSSVSI AYLGIFIASL LYKPPYSSLQ NFDLINSILK RGPKRILWDK 650
    IINGVYNWSY NRAYIDSFYT RSFTGGIRGL AKLTHFFDRR IVDGITNGVG 700
    VINFFIGEAI KYIGGGRISS YLFFYLTYVS IFLLVFFII 739
    Length:739
    Mass (Da):83,763
    Last modified:November 14, 2006 - v1
    Checksum:iECEF683274CE5952
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF044213 Genomic DNA. Translation: ABJ89726.1.
    RefSeqiYP_817529.1. NC_008535.1.

    Genome annotation databases

    GeneIDi4421847.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF044213 Genomic DNA. Translation: ABJ89726.1 .
    RefSeqi YP_817529.1. NC_008535.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4421847.

    Family and domain databases

    InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
    IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
    IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
    IPR003945. NADHpl_OxRdtase_5.
    IPR018393. NADHpl_OxRdtase_5_subgr.
    [Graphical view ]
    Pfami PF00361. Oxidored_q1. 1 hit.
    PF01010. Oxidored_q1_C. 1 hit.
    PF00662. Oxidored_q1_N. 1 hit.
    [Graphical view ]
    PRINTSi PR01435. NPOXDRDTASE5.
    TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms."
      Samson N., Bausher M.G., Lee S.-B., Jansen R.K., Daniell H.
      Plant Biotechnol. J. 5:339-353(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiNU5C_COFAR
    AccessioniPrimary (citable) accession number: A0A382
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 20, 2009
    Last sequence update: November 14, 2006
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3