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Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene

ndhF

Organism
Coffea arabica (Arabian coffee)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).By similarity

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Transport

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene namesi
Name:ndhF
Encoded oniPlastid; Chloroplast
OrganismiCoffea arabica (Arabian coffee)
Taxonomic identifieri13443 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeCoffeeaeCoffea

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei9 – 29HelicalSequence analysisAdd BLAST21
Transmembranei40 – 60HelicalSequence analysisAdd BLAST21
Transmembranei89 – 109HelicalSequence analysisAdd BLAST21
Transmembranei125 – 145HelicalSequence analysisAdd BLAST21
Transmembranei147 – 167HelicalSequence analysisAdd BLAST21
Transmembranei184 – 204HelicalSequence analysisAdd BLAST21
Transmembranei224 – 244HelicalSequence analysisAdd BLAST21
Transmembranei258 – 278HelicalSequence analysisAdd BLAST21
Transmembranei289 – 311HelicalSequence analysisAdd BLAST23
Transmembranei318 – 338HelicalSequence analysisAdd BLAST21
Transmembranei354 – 374HelicalSequence analysisAdd BLAST21
Transmembranei396 – 416HelicalSequence analysisAdd BLAST21
Transmembranei427 – 447HelicalSequence analysisAdd BLAST21
Transmembranei546 – 566HelicalSequence analysisAdd BLAST21
Transmembranei605 – 625HelicalSequence analysisAdd BLAST21
Transmembranei718 – 738HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003609251 – 739NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticAdd BLAST739

Keywords - PTMi

Quinone

Interactioni

Subunit structurei

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.By similarity

Family & Domainsi

Sequence similaritiesi

Belongs to the complex I subunit 5 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

InterProiIPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
IPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF01010. Proton_antipo_C. 1 hit.
PF00361. Proton_antipo_M. 1 hit.
PF00662. Proton_antipo_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A382-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQQTYQYGWI IPFIPLPIPI LIGVGLLLFP TATKNLRRMW SFQSVLLLTI
60 70 80 90 100
VMIFSINLSI QQINSNSIYQ YVWSWIINND FSLEFGYLID PLTSIMSILI
110 120 130 140 150
TTVGIMVLIY SDNYMAHDQA YLRFFAYMGF FSTSMLGLVT SSNLIQIYIF
160 170 180 190 200
WELVGMCSYL LIGFWFTRPL AANACQKAFV TNRIGDFGLL LGILGFYWIT
210 220 230 240 250
GSFEFRDLFE IFNNLIYDNE VNSLFVTLCA GLVFAGAVAK SAQFPLHVWL
260 270 280 290 300
PDAMEGPTPI SALIHAATMV AAGIFLVARL IPLFIVIPYI MNFISLIGII
310 320 330 340 350
TVLLGATLAL AQKDIKRGLA FSTMSQLGYM MLALGMGSYR SALFHLITHA
360 370 380 390 400
YSKALLFLGS GSVIHSMETI VGYSPYKSQN MVLMGGLTKH IPITKNTFLL
410 420 430 440 450
GTLSLCGIPP LACFWSKDEI LNDSWLYSTI FAIIAWATAG LTAFYIFRIY
460 470 480 490 500
LLTFEGHLSV HFQNYIGKEK VFFYSISLWG RGASKKINNN FSLSTMNNIE
510 520 530 540 550
SSSFLKKKTY PIAENVRNVT RPFITITHFE NKKFYSYPYE PDNTMLFPLL
560 570 580 590 600
ILGLFTLFVG SIGIPFNQEG VDLBILSKWL TPSINLLHQK LSNSMDWYEF
610 620 630 640 650
WKDTVSSVSI AYLGIFIASL LYKPPYSSLQ NFDLINSILK RGPKRILWDK
660 670 680 690 700
IINGVYNWSY NRAYIDSFYT RSFTGGIRGL AKLTHFFDRR IVDGITNGVG
710 720 730
VINFFIGEAI KYIGGGRISS YLFFYLTYVS IFLLVFFII
Length:739
Mass (Da):83,763
Last modified:November 14, 2006 - v1
Checksum:iECEF683274CE5952
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF044213 Genomic DNA. Translation: ABJ89726.1.
RefSeqiYP_817529.1. NC_008535.1.

Genome annotation databases

GeneIDi4421847.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF044213 Genomic DNA. Translation: ABJ89726.1.
RefSeqiYP_817529.1. NC_008535.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4421847.

Family and domain databases

InterProiIPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
IPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF01010. Proton_antipo_C. 1 hit.
PF00361. Proton_antipo_M. 1 hit.
PF00662. Proton_antipo_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNU5C_COFAR
AccessioniPrimary (citable) accession number: A0A382
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: November 14, 2006
Last modified: September 16, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.