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A0A382

- NU5C_COFAR

UniProt

A0A382 - NU5C_COFAR

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Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene
ndhF
Organism
Coffea arabica (Arabian coffee)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
  2. transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Transport

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene namesi
Name:ndhF
Encoded oniPlastid; Chloroplast
OrganismiCoffea arabica (Arabian coffee)
Taxonomic identifieri13443 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeCoffeeaeCoffea

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei9 – 2921Helical; Reviewed predictionAdd
BLAST
Transmembranei40 – 6021Helical; Reviewed predictionAdd
BLAST
Transmembranei89 – 10921Helical; Reviewed predictionAdd
BLAST
Transmembranei125 – 14521Helical; Reviewed predictionAdd
BLAST
Transmembranei147 – 16721Helical; Reviewed predictionAdd
BLAST
Transmembranei184 – 20421Helical; Reviewed predictionAdd
BLAST
Transmembranei224 – 24421Helical; Reviewed predictionAdd
BLAST
Transmembranei258 – 27821Helical; Reviewed predictionAdd
BLAST
Transmembranei289 – 31123Helical; Reviewed predictionAdd
BLAST
Transmembranei318 – 33821Helical; Reviewed predictionAdd
BLAST
Transmembranei354 – 37421Helical; Reviewed predictionAdd
BLAST
Transmembranei396 – 41621Helical; Reviewed predictionAdd
BLAST
Transmembranei427 – 44721Helical; Reviewed predictionAdd
BLAST
Transmembranei546 – 56621Helical; Reviewed predictionAdd
BLAST
Transmembranei605 – 62521Helical; Reviewed predictionAdd
BLAST
Transmembranei718 – 73821Helical; Reviewed predictionAdd
BLAST

GO - Cellular componenti

  1. chloroplast thylakoid membrane Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 739739NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000360925Add
BLAST

Keywords - PTMi

Quinone

Interactioni

Subunit structurei

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A382-1 [UniParc]FASTAAdd to Basket

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MQQTYQYGWI IPFIPLPIPI LIGVGLLLFP TATKNLRRMW SFQSVLLLTI    50
VMIFSINLSI QQINSNSIYQ YVWSWIINND FSLEFGYLID PLTSIMSILI 100
TTVGIMVLIY SDNYMAHDQA YLRFFAYMGF FSTSMLGLVT SSNLIQIYIF 150
WELVGMCSYL LIGFWFTRPL AANACQKAFV TNRIGDFGLL LGILGFYWIT 200
GSFEFRDLFE IFNNLIYDNE VNSLFVTLCA GLVFAGAVAK SAQFPLHVWL 250
PDAMEGPTPI SALIHAATMV AAGIFLVARL IPLFIVIPYI MNFISLIGII 300
TVLLGATLAL AQKDIKRGLA FSTMSQLGYM MLALGMGSYR SALFHLITHA 350
YSKALLFLGS GSVIHSMETI VGYSPYKSQN MVLMGGLTKH IPITKNTFLL 400
GTLSLCGIPP LACFWSKDEI LNDSWLYSTI FAIIAWATAG LTAFYIFRIY 450
LLTFEGHLSV HFQNYIGKEK VFFYSISLWG RGASKKINNN FSLSTMNNIE 500
SSSFLKKKTY PIAENVRNVT RPFITITHFE NKKFYSYPYE PDNTMLFPLL 550
ILGLFTLFVG SIGIPFNQEG VDLBILSKWL TPSINLLHQK LSNSMDWYEF 600
WKDTVSSVSI AYLGIFIASL LYKPPYSSLQ NFDLINSILK RGPKRILWDK 650
IINGVYNWSY NRAYIDSFYT RSFTGGIRGL AKLTHFFDRR IVDGITNGVG 700
VINFFIGEAI KYIGGGRISS YLFFYLTYVS IFLLVFFII 739
Length:739
Mass (Da):83,763
Last modified:November 14, 2006 - v1
Checksum:iECEF683274CE5952
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF044213 Genomic DNA. Translation: ABJ89726.1.
RefSeqiYP_817529.1. NC_008535.1.

Genome annotation databases

GeneIDi4421847.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
EF044213 Genomic DNA. Translation: ABJ89726.1 .
RefSeqi YP_817529.1. NC_008535.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4421847.

Family and domain databases

InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view ]
PRINTSi PR01435. NPOXDRDTASE5.
TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms."
    Samson N., Bausher M.G., Lee S.-B., Jansen R.K., Daniell H.
    Plant Biotechnol. J. 5:339-353(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiNU5C_COFAR
AccessioniPrimary (citable) accession number: A0A382
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: November 14, 2006
Last modified: May 14, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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