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A0A382

- NU5C_COFAR

UniProt

A0A382 - NU5C_COFAR

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Protein

NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

Gene

ndhF

Organism
Coffea arabica (Arabian coffee)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).By similarity

Catalytic activityi

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

GO - Molecular functioni

  1. NADH dehydrogenase (ubiquinone) activity Source: InterPro
  2. quinone binding Source: UniProtKB-KW

GO - Biological processi

  1. ATP synthesis coupled electron transport Source: InterPro
  2. transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Transport

Keywords - Ligandi

NAD, NADP, Plastoquinone

Names & Taxonomyi

Protein namesi
Recommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC:1.6.5.-)
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene namesi
Name:ndhF
Encoded oniPlastid; Chloroplast
OrganismiCoffea arabica (Arabian coffee)
Taxonomic identifieri13443 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeCoffeeaeCoffea

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei9 – 2921HelicalSequence AnalysisAdd
BLAST
Transmembranei40 – 6021HelicalSequence AnalysisAdd
BLAST
Transmembranei89 – 10921HelicalSequence AnalysisAdd
BLAST
Transmembranei125 – 14521HelicalSequence AnalysisAdd
BLAST
Transmembranei147 – 16721HelicalSequence AnalysisAdd
BLAST
Transmembranei184 – 20421HelicalSequence AnalysisAdd
BLAST
Transmembranei224 – 24421HelicalSequence AnalysisAdd
BLAST
Transmembranei258 – 27821HelicalSequence AnalysisAdd
BLAST
Transmembranei289 – 31123HelicalSequence AnalysisAdd
BLAST
Transmembranei318 – 33821HelicalSequence AnalysisAdd
BLAST
Transmembranei354 – 37421HelicalSequence AnalysisAdd
BLAST
Transmembranei396 – 41621HelicalSequence AnalysisAdd
BLAST
Transmembranei427 – 44721HelicalSequence AnalysisAdd
BLAST
Transmembranei546 – 56621HelicalSequence AnalysisAdd
BLAST
Transmembranei605 – 62521HelicalSequence AnalysisAdd
BLAST
Transmembranei718 – 73821HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. chloroplast Source: UniProtKB-KW
  2. integral component of membrane Source: UniProtKB-KW
  3. thylakoid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 739739NAD(P)H-quinone oxidoreductase subunit 5, chloroplasticPRO_0000360925Add
BLAST

Keywords - PTMi

Quinone

Interactioni

Subunit structurei

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.By similarity

Family & Domainsi

Sequence similaritiesi

Belongs to the complex I subunit 5 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

InterProiIPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view]
PfamiPF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view]
PRINTSiPR01435. NPOXDRDTASE5.
TIGRFAMsiTIGR01974. NDH_I_L. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A382-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQQTYQYGWI IPFIPLPIPI LIGVGLLLFP TATKNLRRMW SFQSVLLLTI
60 70 80 90 100
VMIFSINLSI QQINSNSIYQ YVWSWIINND FSLEFGYLID PLTSIMSILI
110 120 130 140 150
TTVGIMVLIY SDNYMAHDQA YLRFFAYMGF FSTSMLGLVT SSNLIQIYIF
160 170 180 190 200
WELVGMCSYL LIGFWFTRPL AANACQKAFV TNRIGDFGLL LGILGFYWIT
210 220 230 240 250
GSFEFRDLFE IFNNLIYDNE VNSLFVTLCA GLVFAGAVAK SAQFPLHVWL
260 270 280 290 300
PDAMEGPTPI SALIHAATMV AAGIFLVARL IPLFIVIPYI MNFISLIGII
310 320 330 340 350
TVLLGATLAL AQKDIKRGLA FSTMSQLGYM MLALGMGSYR SALFHLITHA
360 370 380 390 400
YSKALLFLGS GSVIHSMETI VGYSPYKSQN MVLMGGLTKH IPITKNTFLL
410 420 430 440 450
GTLSLCGIPP LACFWSKDEI LNDSWLYSTI FAIIAWATAG LTAFYIFRIY
460 470 480 490 500
LLTFEGHLSV HFQNYIGKEK VFFYSISLWG RGASKKINNN FSLSTMNNIE
510 520 530 540 550
SSSFLKKKTY PIAENVRNVT RPFITITHFE NKKFYSYPYE PDNTMLFPLL
560 570 580 590 600
ILGLFTLFVG SIGIPFNQEG VDLBILSKWL TPSINLLHQK LSNSMDWYEF
610 620 630 640 650
WKDTVSSVSI AYLGIFIASL LYKPPYSSLQ NFDLINSILK RGPKRILWDK
660 670 680 690 700
IINGVYNWSY NRAYIDSFYT RSFTGGIRGL AKLTHFFDRR IVDGITNGVG
710 720 730
VINFFIGEAI KYIGGGRISS YLFFYLTYVS IFLLVFFII
Length:739
Mass (Da):83,763
Last modified:November 14, 2006 - v1
Checksum:iECEF683274CE5952
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF044213 Genomic DNA. Translation: ABJ89726.1.
RefSeqiYP_817529.1. NC_008535.1.

Genome annotation databases

GeneIDi4421847.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF044213 Genomic DNA. Translation: ABJ89726.1 .
RefSeqi YP_817529.1. NC_008535.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4421847.

Family and domain databases

InterProi IPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view ]
Pfami PF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view ]
PRINTSi PR01435. NPOXDRDTASE5.
TIGRFAMsi TIGR01974. NDH_I_L. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms."
    Samson N., Bausher M.G., Lee S.-B., Jansen R.K., Daniell H.
    Plant Biotechnol. J. 5:339-353(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiNU5C_COFAR
AccessioniPrimary (citable) accession number: A0A382
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: November 14, 2006
Last modified: October 29, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3