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A0A382 (NU5C_COFAR) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

EC=1.6.5.-
Alternative name(s):
NAD(P)H dehydrogenase subunit 5
NADH-plastoquinone oxidoreductase subunit 5
Gene names
Name:ndhF
Encoded onPlastid; Chloroplast
OrganismCoffea arabica (Arabian coffee)
Taxonomic identifier13443 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsGentianalesRubiaceaeIxoroideaeCoffeeaeCoffea

Protein attributes

Sequence length739 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.

Catalytic activity

NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol.

Subunit structure

NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.

Subcellular location

Plastidchloroplast thylakoid membrane; Multi-pass membrane protein By similarity.

Sequence similarities

Belongs to the complex I subunit 5 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 739739NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
PRO_0000360925

Regions

Transmembrane9 – 2921Helical; Potential
Transmembrane40 – 6021Helical; Potential
Transmembrane89 – 10921Helical; Potential
Transmembrane125 – 14521Helical; Potential
Transmembrane147 – 16721Helical; Potential
Transmembrane184 – 20421Helical; Potential
Transmembrane224 – 24421Helical; Potential
Transmembrane258 – 27821Helical; Potential
Transmembrane289 – 31123Helical; Potential
Transmembrane318 – 33821Helical; Potential
Transmembrane354 – 37421Helical; Potential
Transmembrane396 – 41621Helical; Potential
Transmembrane427 – 44721Helical; Potential
Transmembrane546 – 56621Helical; Potential
Transmembrane605 – 62521Helical; Potential
Transmembrane718 – 73821Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
A0A382 [UniParc].

Last modified November 14, 2006. Version 1.
Checksum: ECEF683274CE5952

FASTA73983,763
        10         20         30         40         50         60 
MQQTYQYGWI IPFIPLPIPI LIGVGLLLFP TATKNLRRMW SFQSVLLLTI VMIFSINLSI 

        70         80         90        100        110        120 
QQINSNSIYQ YVWSWIINND FSLEFGYLID PLTSIMSILI TTVGIMVLIY SDNYMAHDQA 

       130        140        150        160        170        180 
YLRFFAYMGF FSTSMLGLVT SSNLIQIYIF WELVGMCSYL LIGFWFTRPL AANACQKAFV 

       190        200        210        220        230        240 
TNRIGDFGLL LGILGFYWIT GSFEFRDLFE IFNNLIYDNE VNSLFVTLCA GLVFAGAVAK 

       250        260        270        280        290        300 
SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL IPLFIVIPYI MNFISLIGII 

       310        320        330        340        350        360 
TVLLGATLAL AQKDIKRGLA FSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS 

       370        380        390        400        410        420 
GSVIHSMETI VGYSPYKSQN MVLMGGLTKH IPITKNTFLL GTLSLCGIPP LACFWSKDEI 

       430        440        450        460        470        480 
LNDSWLYSTI FAIIAWATAG LTAFYIFRIY LLTFEGHLSV HFQNYIGKEK VFFYSISLWG 

       490        500        510        520        530        540 
RGASKKINNN FSLSTMNNIE SSSFLKKKTY PIAENVRNVT RPFITITHFE NKKFYSYPYE 

       550        560        570        580        590        600 
PDNTMLFPLL ILGLFTLFVG SIGIPFNQEG VDLBILSKWL TPSINLLHQK LSNSMDWYEF 

       610        620        630        640        650        660 
WKDTVSSVSI AYLGIFIASL LYKPPYSSLQ NFDLINSILK RGPKRILWDK IINGVYNWSY 

       670        680        690        700        710        720 
NRAYIDSFYT RSFTGGIRGL AKLTHFFDRR IVDGITNGVG VINFFIGEAI KYIGGGRISS 

       730 
YLFFYLTYVS IFLLVFFII 

« Hide

References

[1]"The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms."
Samson N., Bausher M.G., Lee S.-B., Jansen R.K., Daniell H.
Plant Biotechnol. J. 5:339-353(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EF044213 Genomic DNA. Translation: ABJ89726.1.
RefSeqYP_817529.1. NC_008535.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4421847.

Phylogenomic databases

ProtClustDBCHL00025.

Family and domain databases

InterProIPR001750. NADH_UbQ/plastoQ_OxRdtase.
IPR001516. NADH_UbQ_OxRdtase_chain5/L_N.
IPR002128. NADH_UbQ_OxRdtase_chlpt_su5_C.
IPR003945. NADHpl_OxRdtase_5.
IPR018393. NADHpl_OxRdtase_5_subgr.
[Graphical view]
PfamPF00361. Oxidored_q1. 1 hit.
PF01010. Oxidored_q1_C. 1 hit.
PF00662. Oxidored_q1_N. 1 hit.
[Graphical view]
PRINTSPR01435. NPOXDRDTASE5.
TIGRFAMsTIGR01974. NDH_I_L. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNU5C_COFAR
AccessionPrimary (citable) accession number: A0A382
Entry history
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: November 14, 2006
Last modified: February 19, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families